SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132678

Length: 336 nt

UniGene Fasta

>sp_v3.0_unigene132678
CGTCGTGACCTTGGCTGTCACTCATTTTTCGAAGGCTGTCAAATATGAAGAAAATGGTGCTGAAAGTGGCGATCGAAGGCGAGAAAAGCAAGAGAAGGGCCATGAGAGCTGTTGCAGCTGTTGAAGGCGTAGAGTCTGTTTCAGTTGATATGCAGAAGAGGGAGATAACTGTGATCGGAGAAGCAGATCCCGTGGTTGTGGCAAAGAAACTGATGAAGCTTGGATTCAGAGAGCTGCTGAGCGTGGGTCCTGCCAAGGAAGAGAAGGCGGCTGCAGAGACTCCGACAGTTGTGTATCATCATGAAGTGAATCCCCAATATGGGTACGGGCGTTCGC

Ace file of the UniGene sp_v3.0_unigene132678

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00403, HMA, Heavy-metal-associated domain	-	-	9.0e-08	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Source	GOs	Term	Type	e value	Identity
Sma3	metal ion binding	GO:0046872	Molecular Function	0.0	-
Sma3	metal ion transport	GO:0030001	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002303608.1	predicted protein [Populus trichocarpa]	4.0e-11	46%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTA0

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 97 - 117

Fln protein: MKKMVLKVAIEGEKSKRRAMRAVAAVEGVESVSVDMQKREITVIGEADPVVVAKKLMKLGFRELLSVGPAKEEKAAAETPTVVYHHEVNPQYGYGRS

Protein Length: 98

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTCGAAGGCTGTCAAAT_-_ATGAAGAAAATGGTGCTGAAAGTGGCGATCGAAGGCGAGAAAAGCAAGAGAAGGGCCATGAGAGCTGTTGCAGCTGTTGAAGGCGTAGAGTCTGTTTCAGTTGATATGCAGAAGAGGGAGATAACTGTGATCGGAGAAGCAGATCCCGTGGTTGTGGCAAAGAAACTGATGAAGCTTGGATTCAGAGAGCTGCTGAGCGTGGGTCCTGCCAAGGAAGAGAAGGCGGCTGCAGAGACTCCGACAGTTGTGTATCATCATGAAGTGAATCCCCAATATGGGTACGGGCGTTCGC

Fln Alignment:

AllPine_a_rep_c87288___MKKMVLKVAIEGEKSKRRAMRXXXXXXXXXXXXXDMQKREITVIGEADPVVVAKKLMKLGFRELLSVGPXXXXXXXXXTPTVVYHHEVNPQYGYG
A9NTA0________________MKKMVLKVAIEDEKSKRRAMRAVAAVEGVESVAVDMNERKITVIGEADPVDVAKKLMKLGFTELLSVGSANEEKAAAETPAVVYHHQLNPNYVYG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
60		66		33	0.997464
141			33	66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain