SustainPineDB

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Assembly info
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SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132546

Length: 348 nt

UniGene Fasta

>sp_v3.0_unigene132546
ATGCGAATCCTCACTGTACAACAGTTATCACCAACAATTAAAGGAATAGATAGTTTGATAACAATCGAAGCTCCTATAGGATATCAGACGGGATCCTTTGCAAGAAACTATTTAATAGAGGAGCTAGGTATAGCGCCATCGAGACTCATCCCCATTGTTTCCACAGAAAAATATGCTGAAGCATTGTCCCTGGGACCAAGCAATGGAGGCGTGGCAGCAATTGTAGATGAGCTTCCTTATGCCCAATACTTTCTATCAACTAAATGTGGATTTGCAATTGTTGGTCAGCAATTTACTAGAAGTGGATGGGGTTTTGCTTTCCCAAAGGGTTCGCAGCTGGCAATTGAC

Ace file of the UniGene sp_v3.0_unigene132546

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glutamate receptor [Malus hupehensis]	-	-	3.0e-35	59%
FL-Next	sp=Glutamate receptor 3.3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Sma3	Glutamate-gated kainate-type ion channel receptor subunit GluR5	-	-	4.436e-19	-

Source	Gene names
Sma3	ACL1; At1g05200; At1g42540; At2g17260; At2g32390; At2g32400; At3g51480; At4g35290; F23E12.150; F26O13.120; GLR2; GLR3.1; GLR3.2; GLR3.3; GLR3.4; GLR3.5; GLR3.6; GLR3.7; GLR4; GLR5; GLR6; GLUR2; GLUR3; GSVIVT00002906001; GSVIVT00019331001; GSVIVT0002603300

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	G-protein coupled receptor activity	GO:0004930	Molecular Function	-
Sma3	G-protein coupled GABA receptor activity	GO:0004965	Molecular Function	-
Sma3	ionotropic glutamate receptor activity	GO:0004970	Molecular Function	-
Sma3	extracellular-glutamate-gated ion channel activity	GO:0005234	Molecular Function	-
Sma3	ion transport	GO:0006811	Biological Process	-
Sma3	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, family 3	IPR000337	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Extracellular solute-binding protein, family 3	IPR001638	-	-
Sma3	Extracellular ligand-binding receptor	IPR001828	-	-
Sma3	GPCR, family 3, gamma-aminobutyric acid receptor, type B	IPR002455	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3		IPR015683	-	-
Sma3	Ionotropic glutamate receptor, plant	IPR017103	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G42540.1	ATGLR3.3, GLR3.3 glutamate receptor 3.3 chr1:15973489-15976703 FORWARD LENGTH=933	9.00054e-42	64%
RefSeq	Arabidopsis thaliana	NP_174978.1	glutamate receptor 3.3 [Arabidopsis thaliana]	9.99967e-42	64%
RefSeq	Populus trichocarpa	XP_002313575.1	glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa]	6.99949e-42	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C8E7

Fln msg: Distance to subject end: 148 aas, your sequence is shorter than subject: 116 - 933

Fln protein: MRILTVQQLSPTIKGIDSLITIEAPIGYQTGSFARNYLIEELGIAPSRLIPIVSTEKYAEALSLGPSNGGVAAIVDELPYAQYFLSTKCGFAIVGQQFTRSGWGFAFPKGSQLAID

Protein Length: 117

Fln nts: ATGCGAATCCTCACTGTACAACAGTTATCACCAACAATTAAAGGAATAGATAGTTTGATAACAATCGAAGCTCCTATAGGATATCAGACGGGATCCTTTGCAAGAAACTATTTAATAGAGGAGCTAGGTATAGCGCCATCGAGACTCATCCCCATTGTTTCCACAGAAAAATATGCTGAAGCATTGTCCCTGGGACCAAGCAATGGAGGCGTGGCAGCAATTGTAGATGAGCTTCCTTATGCCCAATACTTTCTATCAACTAAATGTGGATTTGCAATTGTTGGTCAGCAATTTACTAGAAGTGGATGGGGTTTTGCTTTCCCAAAGGGTTCGCAGCTGGCAATTGAC

Fln Alignment:

AllPine_a_rep_c87024___ILTVQQLSPTIKGIDSLITIEAPIGYQTGSFARNYLIEELGIAPSRLIPIVSTEKYAEALSLGPSNGGVAAIVDELPYAQYFLSTKCGFAIVGQQFTRSGWGFAFPKGSQLAID
Q9C8E7________________ILTVQQLSSPIKGIESLRERDDPIGYQVGSFAESYLRNELNISESRLVPLGTPEAYAKALKDGPSKGGVAAIVDERPYVELFLSSNCAYRIVGQEFTKSGWGFAFPRDSPLAID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain