SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132437

Length: 419 nt

UniGene Fasta

>sp_v3.0_unigene132437
GAAGAAACTCCATTACAGGTCCGCCTCAATGGTGTTGCGACTTTTATTGGTAAGGTTGGACTTGCAGTTGCAGTTGTAGTCCTTGTTATCGTCTTGATTAGATTCTTTACAGGACATACAGAAGACTCCAAAGGGAAACCCATGTTTCAAGCAGGAAAGACTAAGGTTGGAGATGCAATCGATGGAGTTGTTAAAATCTTTGCAATTGCGGTCACCATCGTTGTTGTTGCAGTTCCAGAAGGACTTCCATTGGCAGTCACCTTGACTCTAGCTTATTCAATGAAGAAGATGATGGTTGACAAGGCTTTGGTACGAAGGTTGTCAGCTTGTGAGACAATGGGTTCTGCTACAACAATTTGTAGTGACAAAACAGGGACACTGACAATGAATCAGATGACAGTTGTTAAGGCATGCTTTGG

Ace file of the UniGene sp_v3.0_unigene132437

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cation-transporting atpase plant, putative n=1 Tax=Ricinus communis RepID=B9RWZ4_RICCO	-	-	5.0e-40	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Sma3	Autoinhibited calcium ATPase	-	-	9.528e-40	-

Source	ECs	Term	Type	e value	Identity
Sma3	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	-

Source	Gene names
Sma3	ACA1; ACA10; ACA11; ACA12; ACA13; ACA2; ACA4; ACA7; ACA8; ACA9; AT5G57110; ATPase1-2B; At1g27770; At2g22950; At2g41560; At3g21180; At3g22910; At3g57330; At3g63380; At3g63380/MAA21_10; At4g29900; At4g37640; At5g57110; B1150F11.11; CHLREDRAFT_104709; CHLRED

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast inner membrane	GO:0009706	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	damaged DNA binding	GO:0003684	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	calcium channel activity	GO:0005262	Molecular Function	-
Sma3	calcium-transporting ATPase activity	GO:0005388	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	protein self-association	GO:0043621	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-
Sma3	single fertilization	GO:0007338	Biological Process	-
Sma3	pollen development	GO:0009555	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	inflorescence morphogenesis	GO:0048281	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	DNA-repair protein, UmuC-like	IPR001126	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	ATPase, P-type, calcium-transporting	IPR005782	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, calcium-transporting, PMCA-type	IPR006408	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	DNA-repair protein, UmuC-like, N-terminal	IPR017963	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G57110.1	ACA8, AT-ACA8 autoinhibited Ca2+ -ATPase, isoform 8 chr5:23109729-23116857 REVERSE LENGTH=1074	81%
RefSeq	Arabidopsis thaliana	NP_851200.1	calcium-transporting ATPase 8 [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002325251.1	autoinhibited calcium ATPase, partial [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS1

Fln msg: Distance to subject end: 601 aas, your sequence is shorter than subject: 139 - 955

Fln protein: EETPLQVRLNGVATFIGKVGLAVAVVVLVIVLIRFFTGHTEDSKGKPMFQAGKTKVGDAIDGVVKIFAIAVTIVVVAVPEGLPLAVTLTLAYSMKKMMVDKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVKACF

Protein Length: 140

Fln nts: GAAGAAACTCCATTACAGGTCCGCCTCAATGGTGTTGCGACTTTTATTGGTAAGGTTGGACTTGCAGTTGCAGTTGTAGTCCTTGTTATCGTCTTGATTAGATTCTTTACAGGACATACAGAAGACTCCAAAGGGAAACCCATGTTTCAAGCAGGAAAGACTAAGGTTGGAGATGCAATCGATGGAGTTGTTAAAATCTTTGCAATTGCGGTCACCATCGTTGTTGTTGCAGTTCCAGAAGGACTTCCATTGGCAGTCACCTTGACTCTAGCTTATTCAATGAAGAAGATGATGGTTGACAAGGCTTTGGTACGAAGGTTGTCAGCTTGTGAGACAATGGGTTCTGCTACAACAATTTGTAGTGACAAAACAGGGACACTGACAATGAATCAGATGACAGTTGTTAAGGCATGCTTTGG

Fln Alignment:

AllPine_a_c86806___PEGLPLAVTLTLAYSMKKMMVDKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVK
B8LQS1________________PIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
331	33		66		0.997452
333			66	33	0.997452
334	66		33		0.997452
335		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain