SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132410

Length: 537 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene132410
GGGTATCTTTCATGCTTTGGTGGATGCAGGGTCAGGATACATTTTCATGGATGCACAGCCCAGTCACTGACTAACGTTGTAGCCGTGACAGAGGACGAGAGTGAGTTTGAGTACAAAGAGGGTCCGAAGGGGCCTGAGCACTGTAGGGAACTCAAGGAGGAATGGAAGGCCCGCCGTCTCCCATCGATGTGGTGAAGAGACATGCCATAATTTATCCGAACCTGGGCAGGCTCCGCAGAATCTATTGCCCTGCAAAAGCAACCCTTGTCAACAGGGGCCACGACATCATGGTGAACTGGTCGGAAGGCGCTGGCGAAGTTGACATAGAAGGGAAAAGATTCACACTGCATCAAAGCCATTGGCACACCCCGGCCGAGCACACTGTATTATGGAAAGGTCTATTGTTTTATGGTCTGGTGAAAAGTTGGAGCACTTTGCATGAGGATTACACACGTGCAAACCTGGTGGGCATGTTTTCCATGGTCAAAGCTGTGGAGTTGGCAGGTTGCAATTGGGTTCATGTTGATGTTCTGGATG

Ace file of the UniGene sp_v3.0_unigene132410 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	carbonic anhydrase [Arabidopsis thaliana] gb\|AAM67440.1\| putative storage protein [Arabidopsis thaliana] gb\|AEE28240.1\| carbonic anhydrase [Arabidopsis thaliana]	-	-	2.0e-18	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Source	GOs	Term	Type	Identity
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	one-carbon metabolic process	GO:0006730	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha carbonic anhydrase	IPR001148	-	0.0	-
Sma3		IPR018340	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G08080.1	ATACA7, ACA7 alpha carbonic anhydrase 7 chr1:2517022-2518546 REVERSE LENGTH=275	2.0e-20	51%
RefSeq	Arabidopsis thaliana	NP_172287.1	carbonic anhydrase [Arabidopsis thaliana]	3.0e-20	51%
RefSeq	Populus trichocarpa	XP_002328312.1	predicted protein, partial [Populus trichocarpa]	3.0e-20	52%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP26

Fln msg: Separated hits, possible frame ERROR between 171 and 177, Distance to subject end: 91 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 179 - 271

Fln protein: GYLSCFGGCRVRIHFHGCTAQSLTNVVAVTEDESEFEYKEGPKGPEHCRELKEEWKxxxSPIDVVKRHAIIYPNLGRLRRIYCPAKATLVNRGHDIMVNWSEGAGEVDIEGKRFTLHQSHWHTPAEHTVLWKGLLFYGLVKSWSTLHEDYTRANLVGMFSMVKAVELAGCNWVHVDVLD

Protein Length: 180

Fln nts: GGGTATCTTTCATGCTTTGGTGGATGCAGGGTCAGGATACATTTTCATGGATGCACAGCCCAGTCACTGACTAACGTTGTAGCCGTGACAGAGGACGAGAGTGAGTTTGAGTACAAAGAGGGTCCGAAGGGGCCTGAGCACTGTAGGGAACTCAAGGAGGAATGGAAGGCxxxxxxGTCTCCCATCGATGTGGTGAAGAGACATGCCATAATTTATCCGAACCTGGGCAGGCTCCGCAGAATCTATTGCCCTGCAAAAGCAACCCTTGTCAACAGGGGCCACGACATCATGGTGAACTGGTCGGAAGGCGCTGGCGAAGTTGACATAGAAGGGAAAAGATTCACACTGCATCAAAGCCATTGGCACACCCCGGCCGAGCACACTGTATTATGGAAAGGTCTATTGTTTTATGGTCTGGTGAAAAGTTGGAGCACTTTGCATGAGGATTACACACGTGCAAACCTGGTGGGCATGTTTTCCATGGTCAAAGCTGTGGAGTTGGCAGGTTGCAATTGGGTTCATGTTGATGTTCTGGATG

Fln Alignment:

AllPine_a_rep_c86752___EDESEFEYKEGPKGPEHCRELKEEWKAxxSPIDVVKRHAIIYPNLGRLRRIYCPAKATLVNRGHDIMVNWSEGAGEVDIEGKRFTLHQSHWHTPAEHTV
A9NP26________________DDEREFEYKEGPKGPEHWGELKEEWKAxxSPIDVVKRNAIISPNLGTLHRIYHPANATLVNRGHDIMVNWSEGAGSVEIKGKRFTLKQCHWHTPAEHTI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
287	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain