SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132344

Length: 372 nt

UniGene Fasta

>sp_v3.0_unigene132344
CGTCGTGACCTTGGCTGTCACTCATTTTTGGTGTTAGGGGGTCGAACACCTCGGGATCCAATCGATCAGGGTTTGATTGCTTTCCACTGGGAGACATTAGGAAGCAGTTTGAATGATTTGGTATCTCAGGGCTTGATCGACGAAGAGAAGGTTGACTCGTTCAACATCCCTTTTTATGCTCCATGTCCGGAGGAAGTGAGCAGCGAAGTAAGAAGAGAGGGTTCATTTGAAATACTAAGATTGGAGGTGTTCGGAAAATCAGAGACATTTAGCGAGGAGGATATTGAAGCGATGACAGGGAGCTCAGCCTCTCTAAAGGATGCGTATGGAAGAAACTTGCAAAGCAATTGAGAGCAGTGACTGAAAGCCTGA

Ace file of the UniGene sp_v3.0_unigene132344

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase	-	-	6.0e-26	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Chromosome undetermined scaffold_768, whole genome shotgun sequence	-	-	2.274e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Jasmonate O-methyltransferase.	EC:2.1.1.141	-	9.095e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	alpha-Linolenic acid metabolism	00592		9.095e-08	%

Source	Gene names
Sma3	GSVIVT00004652001; GSVIVT00004653001; GSVIVT00010155001; GSVIVT00024873001; GSVIVT00024877001; GSVIVT00024879001; GSVIVT00024881001; RCOM_0304610; RCOM_1595240; SAMT;

Source	GOs	Term	Type	e value	Identity
Sma3	methyltransferase activity	GO:0008168	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SAM dependent carboxyl methyltransferase	IPR005299	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G66430.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr5:26525410-26526799 REVERSE LENGTH=354	1.0e-12	46%
RefSeq	Arabidopsis thaliana	NP_201444.1	S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]	2.0e-12	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNJ2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 45 aas, your sequence is shorter than subject: 117 - 355

Fln protein: RRDLGCHSFLVLGGRTPRDPIDQGLIAFHWETLGSSLNDLVSQGLIDEEKVDSFNIPFYAPCPEEVSSEVRREGSFEILRLEVFGKSETFSEEDIEAMTGSSASLKDAYGRNLQSN*

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTGGTGTTAGGGGGTCGAACACCTCGGGATCCAATCGATCAGGGTTTGATTGCTTTCCACTGGGAGACATTAGGAAGCAGTTTGAATGATTTGGTATCTCAGGGCTTGATCGACGAAGAGAAGGTTGACTCGTTCAACATCCCTTTTTATGCTCCATGTCCGGAGGAAGTGAGCAGCGAAGTAAGAAGAGAGGGTTCATTTGAAATACTAAGATTGGAGGTGTTCGGAAAATCAGAGACATTTAGCGAGGAGGATATTGAAGCGATGACAGGGAGCTCAGCCTCTCTAAAGGATGCGTATGGAAGAAACTTGCAAAGCAATTGAGAGCAGTGACTGAAAGCCTGA

Fln Alignment:

AllPine_a_rep_c86603___GCHSFLVLGGRTPRDPIDQGLIAFHWETLGSSLNDLVSQGLIDEEKVDSFNIPFYAPCPXXXXXXXXXXGSFEILRLEVFGKSETFSEEDIEAMTGSSASLKDAYGRNL
B8LNJ2________________GGRMLLLLLGRTPHDPIDQGYIALQWELLEISLNDLVKQGLIEEEKVDSFNIPMYCPCPGEVSNEIAREGSFEIQRLELLRRSENFPREEMEAITG-SASAKDAYGQKL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
123	66		33		0.997476
132		66	33		0.997455
133			33	66	0.997455
174			33	66	0.997476
252	33	66			0.997476
253	33		66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain