SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132245

Length: 496 nt

UniGene Fasta

>sp_v3.0_unigene132245
ATGGGATAGTAAAGGATGTTTTGGGGGCTATTGATCATATTCACGAGCATGGAAGTGCTCACACAGACTGTATAATAACTGAAGATCATGATGTTGCGGAGGTTTTCTTACGCCAGGTAGACAGTGCTGCTGTATTTCATAATGCGAGTACACGCTTTTGTGATGGAGCTCGCTTTGGTGGGCTGAGGTTGGAATAAGTACAAGCAGGATACATGCTCGTGGACCTGTAGGAGTTGAAGCCTTCTTTCTGCAATCAACTGGAATCTGCTAATGGTGCCGTTGATGCATTATCATCTGGCACTCTTGAAGGTTTTTCCAATGGTATTAACCTGAAAACTGGATAGGTTATTACCTAAATTAAATGTAGTGTGTTCTTGGAGGTATTATATTGTTCGTACATAACCTAAAGTTTGTCAACCGCCACAAAAGAATATTGTAACTTATAGAGCAGTTCTGCAATTTATTAACTGAAGCAGATTCATGCTAAGACTTGACA

Ace file of the UniGene sp_v3.0_unigene132245

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Delta 1-pyrroline-5-carboxylate synthetase, putative n=2 Tax=Euphorbiaceae RepID=B9SE11_RICCO	-	-	5.0e-28	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Delta-1-pyrroline-5-carboxylate synthetase	-	-	2.257e-30	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutamate-5-semialdehyde dehydrogenase.	EC:1.2.1.41	-	1.629e-24	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Arginine and proline metabolism	00330		1.629e-24	%
Sma3	Metabolic pathways	01100		1.629e-24	%
Sma3	1-pyrroline-5-carboxylate dehydrogenase.	EC:1.5.1.12	-	3.212e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250		3.212e-07	%
Sma3	Arginine and proline metabolism	00330		3.212e-07	%
Sma3	Metabolic pathways	01100		3.212e-07	%
Sma3	Glutamate 5-kinase.	EC:2.7.2.11	-	1.061e-31	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Arginine and proline metabolism	00330		1.061e-31	%
Sma3	Metabolic pathways	01100		1.061e-31	%

Source	Gene names
Sma3	AT2G39800; At2g39800; At3g55610; CHLREDRAFT_130812; F1I16_20; GSD1; GSVIVT00018407001; GSVIVT00021384001; LOC_Os05g38150; MICPUCDRAFT_30966; MICPUN_59938; OJ1651_D06.9; OSTLU_1184; Os01g0848200; Os05g0455500; OsI_04432; OsI_20190; OsJ_04075; OsJ_18779; Ot

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	1-pyrroline-5-carboxylate dehydrogenase activity	GO:0003842	Molecular Function	-
Sma3	glutamate 5-kinase activity	GO:0004349	Molecular Function	-
Sma3	glutamate-5-semialdehyde dehydrogenase activity	GO:0004350	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	proline biosynthetic process	GO:0006561	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Gamma-glutamyl phosphate reductase GPR	IPR000965	-	-
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	-
Sma3	Glutamate/acetylglutamate kinase	IPR001057	-	-
Sma3	Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase	IPR005715	-	-
Sma3	Delta l-pyrroline-5-carboxylate synthetase	IPR005766	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G55610.1	P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 chr3:20624278-20628989 REVERSE LENGTH=726	4.0e-30	84%
RefSeq	Arabidopsis thaliana	NP_191120.2	Gamma-glutamyl phosphate reductase [Arabidopsis thaliana]	6.0e-30	84%
RefSeq	Populus trichocarpa	XP_002315202.1	predicted protein [Populus trichocarpa]	2.0e-29	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR17

Fln msg: your sequence is shorter than subject: 114 - 749

Fln protein: GIVKDVLGAIDHIHEHGSAHTDCIITEDHDVAEVFLRQVDSAAVFHNASTRFCDGARFGGLRLE*VQAGYMLVDL*ELKPSFCNQLESANGAVDALSSGTLEGFSNGINLKTG*

Protein Length: 115

Fln nts: ATGGGATAGTAAAGGATGTTTTGGGGGCTATTGATCATATTCACGAGCATGGAAGTGCTCACACAGACTGTATAATAACTGAAGATCATGATGTTGCGGAGGTTTTCTTACGCCAGGTAGACAGTGCTGCTGTATTTCATAATGCGAGTACACGCTTTTGTGATGGAGCTCGCTTTGGTGGGCTGAGGTTGGAATAAGTACAAGCAGGATACATGCTCGTGGACCTGTAGGAGTTGAAGCCTTCTTTCTGCAATCAACTGGAATCTGCTAATGGTGCCGTTGATGCATTATCATCTGGCACTCTTGAAGGTTTTTCCAATGGTATTAACCTGAAAACTGGATAG___GTTATTACCTAAATTAAATGTAGTGTGTTCTTGGAGGTATTATATTGTTCGTACATAACCTAAAGTTTGTCAACCGCCACAAAAGAATATTGTAACTTATAGAGCAGTTCTGCAATTTATTAACTGAAGCAGATTCATGCTAAGACTTGACA

Fln Alignment:

AllPine_a_rep_c86388___IVKDVLGAIDHIHEHGSAHTDCIITEDHDVAEVFLRQVDSAAVFHNASTRFCDGARFG-----GLRLE*VQA-------------------GYMLVDL*ELK------PSFCNQ-----LESANGAVDALSSGTLEGFSNGINLKTG
B8LR17________________IVKDVLGAIDHIHEHGSAHTDCIITEDRDVAEVFLHQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWLLRGNGQVVNGDHGVKFTHKELPVDCRKKASRMLEAANGAVDALSSGTLEGFSNGNNLKTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain