SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132166

Length: 270 nt

UniGene Fasta

>sp_v3.0_unigene132166
CGTCGTGACCTTGGCTGTCACTCAAATACTTTTTCTAGATTACAACAATTTGAGTGGCGCTGTGCCACTGGAACTAGGTAAGCTGTCTTTCCTTGAACGACTAACATTGGACTCTAATCAGCTTGATAGTGGCAGTAGTACCACCATGCCTTTTCTTACATCTCTTACCAATTGTTCTCACCTACAAATACTAGGCTTGGGCACCAATAAATTAAGTGGTATTTTGCCATCTACTATAGGAAGACTTTCTATCAATCTACGTGAGTTGTC

Ace file of the UniGene sp_v3.0_unigene132166

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	42%

Source	Gene names
Sma3	GSVIVT00022825001; GSVIVT00022830001; POPTRDRAFT_595616; POPTRDRAFT_597185; POPTRDRAFT_806791; VITISV_018291; VITISV_024251;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47110.1	Leucine-rich repeat protein kinase family protein chr3:17347103-17350296 REVERSE LENGTH=1025	8.0e-14	49%
RefSeq	Arabidopsis thaliana	NP_190295.1	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	1.0e-13	49%
RefSeq	Populus trichocarpa	XP_002324325.1	predicted protein [Populus trichocarpa]	9.0e-15	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: I4DUG2

Fln msg: Distance to subject end: 321 aas, your sequence is shorter than subject: 89 - 743

Fln protein: VVTLAVTQILFLDYNNLSGAVPLELGKLSFLERLTLDSNQLDSGSSTTMPFLTSLTNCSHLQILGLGTNKLSGILPSTIGRLSINLREL

Protein Length: 90

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATACTTTTTCTAGATTACAACAATTTGAGTGGCGCTGTGCCACTGGAACTAGGTAAGCTGTCTTTCCTTGAACGACTAACATTGGACTCTAATCAGCTTGATAGTGGCAGTAGTACCACCATGCCTTTTCTTACATCTCTTACCAATTGTTCTCACCTACAAATACTAGGCTTGGGCACCAATAAATTAAGTGGTATTTTGCCATCTACTATAGGAAGACTTTCTATCAATCTACGTGAGTTGTC

Fln Alignment:

AllPine_a_rep_c86230___VVTLAVTQILFLDYNNLSGAVPLELG-KLSFLERLTLDSNQLDSGSSTTMPFLTSLTNCSHLQILGLGTNKLSGILPSTIGRLSI
I4DUG2________________LTNLSKLNILDLYSNQLSGHVPWDIGTKLSNLTYLSLWANQL------TGNIPNSIGNCSRLDILTLTQNRLDGMVPMELGKLSL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
6			33	66	0.997456
10	33	66			0.997467
15			66	33	0.997455
19	33			66	0.997456
20	33	66			0.997456

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain