SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132130

Length: 467 nt

UniGene Fasta

>sp_v3.0_unigene132130
CGTCGTGACCTTGGCTGTCACTCAGCCCTTCATATATGGTTATTCAGAATATATGCAATGAACATCGCAAAAAATGGAATATTGGAGAAGGGACTGCGTTTCTCCTGGTTTTCTAACACCATGTGTCGGCAGCCTCACTGTCCTGGCCTTCTTCTCCCTGGTCATGCCAGTTTTGCCTACCACTTTTGTCTTCGACGGCTTCAATGGAACCAACTTGATCTTGGAGGCTGCTGCTTCACTCATCCCCTCTCAGTCTGCGCTGGCCCTCACGAATCACACGCGTTTTATGCTCGGCCGGGCGCTGTATTCGATCCCTGTTCAAATGAAAAACAATGAGACGCTTTCCTCCTTCAGCACTACCTTCGTTTTTAGCATGGTCCCGCCCCCATCTAACGCAGGCGGGAATGGAATGGCCTTCATCCTCACGCCCTACGCATCTCCAATGGACGCTGTGCCGGCCCAGTATC

Ace file of the UniGene sp_v3.0_unigene132130

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lectin-like receptor kinase 7;1 [Medicago truncatula]	-	-	5.0e-06	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: Distance to subject end: 503 aas, your sequence is shorter than subject: 131 - 636

Fln protein: MEYWRRDCVSPGFLTPCVGSLTVLAFFSLVMPVLPTTFVFDGFNGTNLILEAAASLIPSQSALALTNHTRFMLGRALYSIPVQMKNNETLSSFSTTFVFSMVPPPSNAGGNGMAFILTPYASPMDAVPAQY

Protein Length: 132

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCCCTTCATATATGGTTATTCAGAATATATGCAATGAACATCGCAAAAA_-_ATGGAATATTGGAGAAGGGACTGCGTTTCTCCTGGTTTTCTAACACCATGTGTCGGCAGCCTCACTGTCCTGGCCTTCTTCTCCCTGGTCATGCCAGTTTTGCCTACCACTTTTGTCTTCGACGGCTTCAATGGAACCAACTTGATCTTGGAGGCTGCTGCTTCACTCATCCCCTCTCAGTCTGCGCTGGCCCTCACGAATCACACGCGTTTTATGCTCGGCCGGGCGCTGTATTCGATCCCTGTTCAAATGAAAAACAATGAGACGCTTTCCTCCTTCAGCACTACCTTCGTTTTTAGCATGGTCCCGCCCCCATCTAACGCAGGCGGGAATGGAATGGCCTTCATCCTCACGCCCTACGCATCTCCAATGGACGCTGTGCCGGCCCAGTATC

Fln Alignment:

AllPine_a_c86161___SLTVLAFFSLVMPVLP---------TTFVFDGFNGTNLILEAAASLIPSQSALALTNHTR------FMLGRALYSIPVQMKNNEXXXXXXXXXXXXMVPPPSNAGGNGMAFILTPYASPMDAVPAQY
A9NVC0________________SLVLITFTFLALPLIPAQPVEDPRHTSFLFDGFNGTNLILETDASVIGSKSVLALTNRSHANHSHEFLLGRALYSIPVQMKSNETISSFSTTFVFSIVPPPSNAGGNGIAFFMTPHTSSMDAQPSQY

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
131	66		33		0.997471
132			66	33	0.997471
134		66	33		0.997471
136		66	33		0.997471
153	33			66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain