SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132055

Length: 523 nt

UniGene Fasta

>sp_v3.0_unigene132055
ATATGGTTATGCAGCTCCAGAGTATGTCATGACTGGTCATTTGACGGCTCGTAGTGATGTCTACGGCTTTGGTGTTGTATTGCTTGAGCTGCTTACTGGCAGGCGGTCTATGGATAAGACTAGGCCTAGCAGAGAATATAACTTGGCGGAGTGGGCTCGTCCACTTCTTAACGATAAGCGGAAGTTGTTACAGATACTTGATCCTAGAATGGAGGGAGAGTATTCTGTCAAGGGAGCTCAGAAAGTTGCTAACATGGCCTATTACTGTCTGAGCAAAAATCCCAAAGCAAGGCCACTTATGAGGGATGTTGTTGAGACGTTGGAACCTCTGCAAATTATGGATATGGAAAACACTTCTTCCACATATTCTGTCGGTAGTGGTGTGACAATACTCGAGGTTCCCATTCAGTCACCAGGAAATGGTGTCCAAGCAAATGGCTTCAAGCATCATCCAGACGAATAACTTGCTGTTTTAAATGAAGTTGAAATGTTGCAAGATTGGTCCTGATTCATATAACCAATC

Ace file of the UniGene sp_v3.0_unigene132055

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase n=3 Tax=Vitis vinifera RepID=C5DB54_VITVI	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Protein kinase APK1B, chloroplast, putative	-	-	7.02e-32	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.231e-21	-

Source	Gene names
Sma3	ABC1041; ACIK1; APK1A; APK1B; APK2a; APK2b; ARSK1; At1g07570; At1g14370; At1g14370/F14L17.14; At1g61590; At2g02800; At2g05940; At2g07180; At2g17220; At2g17220/T23A1.8; At2g26290; At2g28930; At3g01300; At3g55450; At5g01020; At5g01020/F7J8_5; At5g02290; At5

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G01020.1	Protein kinase superfamily protein chr5:6309-8270 REVERSE LENGTH=410	81%
RefSeq	Arabidopsis thaliana	NP_195722.2	protein kinase family protein [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002326422.1	predicted protein, partial [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKU3

Fln msg: your sequence is shorter than subject: 154 - 440

Fln protein: YGYAAPEYVMTGHLTARSDVYGFGVVLLELLTGRRSMDKTRPSREYNLAEWARPLLNDKRKLLQILDPRMEGEYSVKGAQKVANMAYYCLSKNPKARPLMRDVVETLEPLQIMDMENTSSTYSVGSGVTILEVPIQSPGNGVQANGFKHHPDE*

Protein Length: 155

Fln nts: ATATGGTTATGCAGCTCCAGAGTATGTCATGACTGGTCATTTGACGGCTCGTAGTGATGTCTACGGCTTTGGTGTTGTATTGCTTGAGCTGCTTACTGGCAGGCGGTCTATGGATAAGACTAGGCCTAGCAGAGAATATAACTTGGCGGAGTGGGCTCGTCCACTTCTTAACGATAAGCGGAAGTTGTTACAGATACTTGATCCTAGAATGGAGGGAGAGTATTCTGTCAAGGGAGCTCAGAAAGTTGCTAACATGGCCTATTACTGTCTGAGCAAAAATCCCAAAGCAAGGCCACTTATGAGGGATGTTGTTGAGACGTTGGAACCTCTGCAAATTATGGATATGGAAAACACTTCTTCCACATATTCTGTCGGTAGTGGTGTGACAATACTCGAGGTTCCCATTCAGTCACCAGGAAATGGTGTCCAAGCAAATGGCTTCAAGCATCATCCAGACGAATAA___CTTGCTGTTTTAAATGAAGTTGAAATGTTGCAAGATTGGTCCTGATTCATATAACCAATC

Fln Alignment:

AllPine_a_rep_c85997___YGYAAPEYVMTGHLTARSDVYGFGVVLLELLTGRRSMDKTRPSREYNLAEWARPLLNDKRKLLQILDPRMEGEYSVKGAQKVANMAYYCLSKNPKARPLMRDVVETLEPLQ-IMDMENXXXXXXXXXXXXILEVPIQSPGNGVQANGFKHH
B8LKU3________________YGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRRSVDKTRPNREHNLVDWARPLLNDKRRLLQIIDPRLEGQYSMKGAQKACSLAYHCLNQNPKARPLMGDVVETLEPLQNRKDMVNASLMYTLNNGIAAYKMQNRLKENGSNINGCHVH

SNPs (tot: 3)

Position	A %	C %	G %	Probability
135	25	25		0.995533
218	75		25	0.996473
219	25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain