SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131950

Length: 526 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene131950
AGGTTGTGTGGGGATTTGTGGGCCTGTCAGTATCTTTGTTATATATTTTGCAGATCTGAGATTTGCTGTGGACTATTATAAGTATTGTTTCTTGAAATTGTGTCCGGAAGCAGAAATGTTATTAGAACTTCTCTGATTAACGTTGTATTTGGACAGGCTGAATACTAACTATTCATCGGGTTGCATACACTTGAAGTGGACTAGAAGGCTTTACAATCGGTTCTGAAACTATGGCATTGACTTTACATGCATCGTCTATCAATAAAAATGGCTTTAAAGCACGCATCACTGCAGAATACGCTGGTGTAAAACTCAACTTAGCTCCAAATTTTGTGATGGGGGAGTCAAATAAATCCCCTGAATTTCTTAAAATGAATCCTATAGGAAAGACTCCGGTTTTGGAGACACCTGAGGGTGCAGTTTTTGAAAGTAATGTCATTGCACGTTATGTTGCACGATTGAAGGGTGACAATACCCTGTTTGGATCTTCACTGATTGATTATGCCCATGTCGAACAGTGGATAGA

Ace file of the UniGene sp_v3.0_unigene131950 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	elongation factor 1-gamma [Glycine max]	-	-	1.0e-35	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Elongation factor 1-gamma	-	-	4.351e-12	-

Source	Gene names
Sma3	AT1G09640; AT1G57720; At1g09640; At1g57720; B1131G07.12; GSVIVT00021932001; GSVIVT00035293001; LOC_Os02g12800; LOC_Os06g37440; MtrDRAFT_AC140549g9v2; OSJNBa0006A22.2; Os02g0220500; Os02g0220600; Os06g0571400; OsI_06401; OsI_06402; OsI_23436; OsJ_05923; Os

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	eukaryotic translation elongation factor 1 complex	GO:0005853	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EF1B, gamma chain, conserved	IPR001662	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G57720.1	Translation elongation factor EF1B, gamma chain chr1:21377873-21380114 FORWARD LENGTH=413	2.0e-38	68%
RefSeq	Arabidopsis thaliana	NP_001031202.1	elongation factor EF-1 gamma subunit [Arabidopsis thaliana]	3.0e-38	68%
RefSeq	Populus trichocarpa	XP_002328789.1	predicted protein [Populus trichocarpa]	1.99993e-41	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWP6

Fln msg: Distance to subject end: 325 aas, your sequence is shorter than subject: 98 - 424

Fln protein: MALTLHASSINKNGFKARITAEYAGVKLNLAPNFVMGESNKSPEFLKMNPIGKTPVLETPEGAVFESNVIARYVARLKGDNTLFGSSLIDYAHVEQWI

Protein Length: 99

Fln nts: AGGTTGTGTGGGGATTTGTGGGCCTGTCAGTATCTTTGTTATATATTTTGCAGATCTGAGATTTGCTGTGGACTATTATAAGTATTGTTTCTTGAAATTGTGTCCGGAAGCAGAAATGTTATTAGAACTTCTCTGATTAACGTTGTATTTGGACAGGCTGAATACTAACTATTCATCGGGTTGCATACACTTGAAGTGGACTAGAAGGCTTTACAATCGGTTCTGAAACT_-_ATGGCATTGACTTTACATGCATCGTCTATCAATAAAAATGGCTTTAAAGCACGCATCACTGCAGAATACGCTGGTGTAAAACTCAACTTAGCTCCAAATTTTGTGATGGGGGAGTCAAATAAATCCCCTGAATTTCTTAAAATGAATCCTATAGGAAAGACTCCGGTTTTGGAGACACCTGAGGGTGCAGTTTTTGAAAGTAATGTCATTGCACGTTATGTTGCACGATTGAAGGGTGACAATACCCTGTTTGGATCTTCACTGATTGATTATGCCCATGTCGAACAGTGGATAGA

Fln Alignment:

AllPine_a_rep_c85750___MALTLHASSINKNGFKARITAEYAGVKLNLAPNFVMGESNKSPEFLKMNPIGKTPVLETPEGAVFESNVIARYVARLKGDNTLFGSSLIDYAHVEQWI
A9NWP6________________MALTLHAGHTNKNAFKALIAAEYVGVKINLAPNFEMGVTNKSQKFLSMNPIGKVPVLETPEGAVFESNAIARYVARLKDDNSLFGSSLIDYGHVEQWI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
350		66		33	0.997476
351		66	33		0.997476
360		33	66		0.997476
379	66		33		0.997456
393	66			33	0.997467
401	66			33	0.997476
406		66	33		0.997476
407		33		66	0.997467
410		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain