SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131933

Length: 353 nt

UniGene Fasta

>sp_v3.0_unigene131933
CGTCGTGACCTTGGCTGTCACTCAAATTGAGGAGGTTCTCTGGAAGCATTCTGGTTGGATGGTGCCGGATGTACAGCTCCGTGGTGAGCTTGGGCATTCATCATAGAAAAGATGATACCAGAGTATCGGTCCTTCTTGGGCAGATTCAATAGCTATTTGGAAAGTGGGAGACACTCTGAGATATATACGAAGTATACACCTGAAGGCGTAGAAGCTCGCCTCTTGGGTCTGTTTAAGGCAACCTATCATCCACGAGGACAGGGACATCCTAGAAGGAAGGAAGGAGTGCGCTAATGTGGAATGAGATCTCATCATGGTGACATTCCATTACGGTAAGATAGCTTGCAGTTACA

Ace file of the UniGene sp_v3.0_unigene131933

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Exocyst complex component, putative n=1 Tax=Ricinus communis RepID=B9RAG8_RICCO	-	-	7.0e-10	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	GOs	Term	Type	e value	Identity
Sma3	exocyst	GO:0000145	Cellular Component	0.0	-
Sma3	exocytosis	GO:0006887	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Exo70 exocyst complex subunit	IPR004140	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G72470.1	ATEXO70D1, EXO70D1 exocyst subunit exo70 family protein D1 chr1:27283759-27285660 FORWARD LENGTH=633	2.0e-11	52%
RefSeq	Arabidopsis thaliana	NP_177391.1	exocyst subunit exo70-D1 [Arabidopsis thaliana]	2.0e-11	52%
RefSeq	Populus trichocarpa	XP_002322248.1	predicted protein [Populus trichocarpa]	4.0e-12	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUF7

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 100 and 100, your sequence is shorter than subject: 98 - 627

Fln protein: VVTLAVTQIEEVLWKHSGWMVPDVQLRGELGHxxIEKMIPEYRSFLGRFNSYLESGRHSEIYTKYTPEGVEARLLGLFKATYHPRGQGHPRRKEGVR*

Protein Length: 99

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTGAGGAGGTTCTCTGGAAGCATTCTGGTTGGATGGTGCCGGATGTACAGCTCCGTGGTGAGCTTGGGCATxxxxxxATAGAAAAGATGATACCAGAGTATCGGTCCTTCTTGGGCAGATTCAATAGCTATTTGGAAAGTGGGAGACACTCTGAGATATATACGAAGTATACACCTGAAGGCGTAGAAGCTCGCCTCTTGGGTCTGTTTAAGGCAACCTATCATCCACGAGGACAGGGACATCCTAGAAGGAAGGAAGGAGTGCGCTAATGTGGAATGAGATCTCATCATGGTGACATTCCATTACGGTAAGATAGCTTGCAGTTACA

Fln Alignment:

AllPine_a_rep_c85716___IEEVLWKHSGWMVPDVQLRGELGHSIIEKMIPEYRSFLGRFNSYLESGRHSEIYTKYTPEGVEARLLGLF
A9NUF7________________IEEVLKKHSGWMVPDVQLREELSISVAEKMIPAYRSFLGRLRKYSESGRHSQINIKYTAEDLEARLLDLF

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
81	50		50		1.0
82	50			50	1.0
83		50	50		1.0
84	50		50		1.0
88		50	50		1.0
93	50		50		1.0
101		50		50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
272	285	GAAG GAAG GAAG GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
81	50		50		1.0
82	50			50	1.0
83		50	50		1.0
84	50		50		1.0
88		50	50		1.0
93	50		50		1.0
101		50		50	1.0

Position	A %	C %	G %	T %	Probability
81	50		50		1.0
82	50			50	1.0
83		50	50		1.0
84	50		50		1.0
88		50	50		1.0
93	50		50		1.0
101		50		50	1.0

Position	A %	C %	G %	T %	Probability
81	50		50		1.0
82	50			50	1.0
83		50	50		1.0
84	50		50		1.0
88		50	50		1.0
93	50		50		1.0
101		50		50	1.0