SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131866

Length: 277 nt

UniGene Fasta

>sp_v3.0_unigene131866
CGTCGTACCTTGGCTGTCACTCATGATTGCCCATGTTTGTGACCTTGTTCCCGGTGATCTTATCCATGTGCTTGGAGATGCTCACGTGTCGTGACCTTGTTGTGCCTCTTTTAGAACAACTGCAGAACTCACCTAGACCGTTTCCAGTTTTGAAAATCAATCCTGAAAAGAAAGATATCGATTCATTTGTTGCGAATGATTTCGAACTCATTGGATATGATTCTCATAAGAAAATAGAAATGAAAATGGCTGTTTAGTTTCTAGTTTGTAGAATGGC

Ace file of the UniGene sp_v3.0_unigene131866

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bifunctional dihydrofolate reductase-thymidylate synthase 2 n=2 Tax=Arabidopsis RepID=DRTS2_ARATH	-	-	8.0e-26	84%
FL-Next	sp=Bifunctional dihydrofolate reductase-thymidylate synthase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	76%
Sma3	Thymidylate synthase	-	-	1.803e-29	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydrofolate reductase.	EC:1.5.1.3	-	1.52041e-42	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	One carbon pool by folate	00670		1.52041e-42	%
Sma3	Folate biosynthesis	00790		1.52041e-42	%
Sma3	Biosynthesis of phenylpropanoids	01061		1.52041e-42	%
Sma3	Metabolic pathways	01100		1.52041e-42	%
Sma3	Thymidylate synthase.	EC:2.1.1.45	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pyrimidine metabolism	00240	%
Sma3	One carbon pool by folate	00670	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	At2g16370; At4g34570; CHLREDRAFT_139742; CM0216.390.nc; DHFR-TS; DHFR-TS-1; DHFR-TS-2; DRTS; F16F14.13; GSVIVT00014568001; GSVIVT00036344001; LOC_Os11g29390; MICPUCDRAFT_56456; MICPUN_58650; OSTLU_49676; Os11g0484400; Os12g0446900; OsI_38205; OsJ_33908; O

Source	GOs	Term	Type	Identity
Sma3	dihydrofolate reductase activity	GO:0004146	Molecular Function	-
Sma3	thymidylate synthase activity	GO:0004799	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	dTMP biosynthetic process	GO:0006231	Biological Process	-
Sma3	glycine biosynthetic process	GO:0006545	Biological Process	-
Sma3	one-carbon metabolic process	GO:0006730	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Thymidylate synthase	IPR000398	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	Bifunctional dihydrofolate reductase/thymidylate synthase	IPR012262	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Dihydrofolate reductase conserved site	IPR017925	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G34570.1	THY-2 thymidylate synthase 2 chr4:16511129-16514110 REVERSE LENGTH=565	3.0e-28	84%
RefSeq	Arabidopsis thaliana	NP_195183.2	thymidylate synthase [Arabidopsis thaliana]	4.0e-28	84%
RefSeq	Populus trichocarpa	XP_002313034.1	dihydrofolate reductase-thymidylate synthase [Populus trichocarpa]	2.0e-25	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q05763

Fln msg: Separated hits, possible frame ERROR between 88 and 99, your sequence is shorter than subject: 86 - 565

Fln protein: VVPWLSLMIAHVCDLVPGDLIHVLGDAHxxxxxVVPLLEQLQNSPRPFPVLKINPEKKDIDSFVANDFELIGYDSHKKIEMKMAV*

Protein Length: 87

Fln nts: CGTCGTACCTTGGCTGTCACTCATGATTGCCCATGTTTGTGACCTTGTTCCCGGTGATCTTATCCATGTGCTTGGAGATGCTCACGTxxxxxxxxxxxxTGTTGTGCCTCTTTTAGAACAACTGCAGAACTCACCTAGACCGTTTCCAGTTTTGAAAATCAATCCTGAAAAGAAAGATATCGATTCATTTGTTGCGAATGATTTCGAACTCATTGGATATGATTCTCATAAGAAAATAGAAATGAAAATGGCTGTTTAGTTTCTAGTTTGTAGAATGGC

Fln Alignment:

AllPine_a_rep_c85582___LSLMIAHVCDLVPGDLIHVLGDAHVxxxxVVPLLEQLQNSPRPFPVLKINPEKKDIDSFVANDFELIGYDSHKKIEMKMAV
Q05763________________LTCILAHVCDLVPGDFIHVIGDAHVxxxxVRPLQEQLENPPKPFPVLKINPEKKDIDSFVADDFELIGYDPHKKIDMKMAV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
116	66	33			0.997467
119	66			33	0.997471
120		66	33		0.997471
122	66	33			0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain