SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131799

Length: 300 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene131799
TTCATTCCATGAGTAGAGATTATAACCTAAAACCTGCAATGGAGCACTATTGTTGCATGGTTGACCTTCTTGGCCGAGCTGGGCATTTGTACGAAGCACAACACTTCATAAACAACATGCCAATAAAACCCGATGCTACTGTGTGGAGTTGTTTACTTGGTGCCTGTAGAATGCATAACAATTTAGAGATAGGAGAATATGTGGCAGACCGTATTTTTGAGTTAGACTCTAAAAATTCTGCACCTTATCTGCTCCTTTTAGGAATCTATGCTGCAGCTGGTAGGTGGGATAGCATTAAAA

Ace file of the UniGene sp_v3.0_unigene131799 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Pentatricopeptide, putative	-	-	8.563e-08	-

Source	Gene names
Sma3	At1g15510; At1g68930; At1g74400; At3g26782; At3g49170; At4g13650; At4g16835; At4g19191; At5g66520; DYW10; EMB2261; F18A5.40; F1M20.8; F2K15.30; FCAALL.441; GSVIVT00000282001; GSVIVT00000293001; GSVIVT00000887001; GSVIVT00001706001; GSVIVT00002423001; GSVI

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:26551879-26553741 FORWARD LENGTH=620	6.0e-26	50%
RefSeq	Arabidopsis thaliana	NP_201453.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	8.0e-26	50%
RefSeq	Populus trichocarpa	XP_002320193.1	predicted protein [Populus trichocarpa]	1.0e-27	55%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: STOP codon was not found. Distance to subject end: 21 aas, your sequence is shorter than subject: 99 - 232

Fln protein: HSMSRDYNLKPAMEHYCCMVDLLGRAGHLYEAQHFINNMPIKPDATVWSCLLGACRMHNNLEIGEYVADRIFELDSKNSAPYLLLLGIYAAAGRWDSIK

Protein Length: 100

Fln nts: TTCATTCCATGAGTAGAGATTATAACCTAAAACCTGCAATGGAGCACTATTGTTGCATGGTTGACCTTCTTGGCCGAGCTGGGCATTTGTACGAAGCACAACACTTCATAAACAACATGCCAATAAAACCCGATGCTACTGTGTGGAGTTGTTTACTTGGTGCCTGTAGAATGCATAACAATTTAGAGATAGGAGAATATGTGGCAGACCGTATTTTTGAGTTAGACTCTAAAAATTCTGCACCTTATCTGCTCCTTTTAGGAATCTATGCTGCAGCTGGTAGGTGGGATAGCATTAAAA

Fln Alignment:

AllPine_a_rep_c85452___HSMSRDYNLKPAMEHYCCMVDLLGRAGHLYEAQHFINNMPIKPDATVWSCLLGACRMHNNLEIGEYVADRI
D5AB53________________NSMSVDYHITPVMEHYCCMVDLLGRTGCLDEAHDFINKMPIEPDTAVWQSLLGACRTHANVDLGEKVAERL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
215	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain