SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131693

Length: 188 nt

UniGene Fasta

>sp_v3.0_unigene131693
TGTATGCCAGATCCGGAAGCATAGAAGATGCACGATTTTTTTTTGACATAATGACCGAAAGAGATGTCGTTGCCTGGACTGCAATGATTGTAGGACATGCACAGCATGGGGAAGGTGAGAAGGCTCTCGAACTCTTTGAACAAATGCAATCTGAAGGAATCAAGCCTAACCACATAACATTTGTTGGT

Ace file of the UniGene sp_v3.0_unigene131693

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein 65 n=2 Tax=Funariaceae RepID=F5CAD8_FUNHY	-	-	5.0e-14	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%

Source	Gene names
Sma3	At3g53360; At4g39530; B1080A02.28; F23K16.160; F4P12_60; GSVIVT00003060001; GSVIVT00011422001; GSVIVT00016825001; GSVIVT00019394001; GSVIVT00019419001; Os01g0355100; Os09g0251500; OsJ_01713; OsJ_28537; P0458A05.18; P0574F11.5; PCMP-E52; PCMP-E86; PHYPADRA

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	0.0	-
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G53360.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:19784502-19786808 FORWARD LENGTH=768	4.0e-19	59%
RefSeq	Arabidopsis thaliana	NP_190904.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	6.0e-19	59%
RefSeq	Populus trichocarpa	XP_002310592.1	predicted protein [Populus trichocarpa]	9.0e-18	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD86

Fln msg: Distance to subject end: 257 aas, your sequence is shorter than subject: 62 - 514

Fln protein: YARSGSIEDARFFFDIMTERDVVAWTAMIVGHAQHGEGEKALELFEQMQSEGIKPNHITFVG

Protein Length: 63

Fln nts: TGTATGCCAGATCCGGAAGCATAGAAGATGCACGATTTTTTTTTGACATAATGACCGAAAGAGATGTCGTTGCCTGGACTGCAATGATTGTAGGACATGCACAGCATGGGGAAGGTGAGAAGGCTCTCGAACTCTTTGAACAAATGCAATCTGAAGGAATCAAGCCTAACCACATAACATTTGTTGGT

Fln Alignment:

AllPine_a_rep_c85260___YARSGSIEDARFFFDIMTERDVVAWTAMIVGHAQHGEGEKALELFEQMQSEGIKPNHITFVG
D5AD86________________YAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain