SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131668

Length: 445 nt

UniGene Fasta

>sp_v3.0_unigene131668
TCTCAAGCGAGATGATAGTGCCAGCAAGCAGTGGGCCTTTGTGAATGTTTGCCATTTTCTTGAAGCTTATCAAGCTCCAGAGAAAATTATTCTCCAGGTATTTCTTGCTCTTTTAAGAACGTCGTGACCTTGGCTGTCACTCAGTTAAGCAAGCCCTGGATATTCTCATACCAGCACTACCACGAAGATTGCCCTTGGGAGAGTACAAGATACCTCTTTGGATCCGTTATACAAAGAAAATCCTAGTTGAAGAAGGGCATTCTGTTGCTAATTTGATTCACATTTTCCAGCTTATTGTGCGACACTCAGACCTATTTTACAGCTGTCGAGCCCAGTTTGTGCCACAAATGGTAAACTCGCTGAGCCGGCTTGGACTGCCTCAGAACACTCCTCCAGAAAACAGACGTCTTGCTATAGAGCTCGCTGGGCTTGTTGTTGCATGGGA

Ace file of the UniGene sp_v3.0_unigene131668

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase, Atypical group [Dictyostelium discoideum AX4] sp\|Q54T85.2\|TRA1_DICDI RecName: Full=Probable transcription-associated protein 1 gb\|EAL66533.2\| protein kinase, Atypical group [Dictyostelium discoideum AX4]	-	-	2.0e-26	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	95%

Source	Gene names
Sma3	AT4g36080; At2g17930; CHLREDRAFT_141477; GSVIVT00036786001; MICPUCDRAFT_47235; MICPUN_91134; OSTLU_42472; OsI_27084; OsJ_25347; PHYPADRAFT_183414; POPTRDRAFT_757154; POPTRDRAFT_827059; RCOM_0870970; T19K4.210; VITISV_021747;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	PIK-related kinase, FATC	IPR003152	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	PIK-related kinase	IPR014009	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G36080.1	" phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases chr4:17059996-17077628 REVERSE LENGTH=3834"	87%
RefSeq	Arabidopsis thaliana	NP_680770.2	transformation/transcription domain-associated protein [Arabidopsis thaliana]	87%
RefSeq	Populus trichocarpa	XP_002327756.1	predicted protein [Populus trichocarpa]	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GWN0

Fln msg: Separated hits, possible frame ERROR between 121 and 144, Distance to subject end: 1890 aas, your sequence is shorter than subject: 148 - 3903

Fln protein: LKRDDSASKQWAFVNVCHFLEAYQAPEKIILQVFLALLRxxxxxxxxxVKQALDILIPALPRRLPLGEYKIPLWIRYTKKILVEEGHSVANLIHIFQLIVRHSDLFYSCRAQFVPQMVNSLSRLGLPQNTPPENRRLAIELAGLVVAW

Protein Length: 149

Fln nts: TCTCAAGCGAGATGATAGTGCCAGCAAGCAGTGGGCCTTTGTGAATGTTTGCCATTTTCTTGAAGCTTATCAAGCTCCAGAGAAAATTATTCTCCAGGTATTTCTTGCTCTTTTAAGAACxxxxxxxxxxxxxxxxxxxxxxxxAGTTAAGCAAGCCCTGGATATTCTCATACCAGCACTACCACGAAGATTGCCCTTGGGAGAGTACAAGATACCTCTTTGGATCCGTTATACAAAGAAAATCCTAGTTGAAGAAGGGCATTCTGTTGCTAATTTGATTCACATTTTCCAGCTTATTGTGCGACACTCAGACCTATTTTACAGCTGTCGAGCCCAGTTTGTGCCACAAATGGTAAACTCGCTGAGCCGGCTTGGACTGCCTCAGAACACTCCTCCAGAAAACAGACGTCTTGCTATAGAGCTCGCTGGGCTTGTTGTTGCATGGGA

Fln Alignment:

AllPine_a_rep_c85209___LKRDDSASKQWAFVNVCHFLEAYQAPEKIILQVFLALLRTxxxxxxxxVKQAXXXXXXXXXXXXXXGEYKIPLWIRYTKKILVEEGHSVANLIHIFQLIVRHSDLFYSCRAQFVPQMVNSLSRLGLPQNTPPENRRLAIELAGLVVAW
F6GWN0________________LKREDSASKQWAFVNVCHFLEAYQAPEKIILQVFVALLRTxxxxxxxxVKQALDILMPALPKRLPLGDSRMPIWIRYTKKILVEEGHSIPNLIHIFQLIVRHSDLFYSCRAQFVPQMVNSLSRLGLPYNTTAENRRLAIELAGLVVGW

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
126		33	66		0.997476
132			33	66	0.997471
133	33			66	0.997467
139	33		66		0.997467
140			33	66	0.997455
141		66	33		0.997455
142	66			33	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain