SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131641

Length: 484 nt

UniGene Fasta

>sp_v3.0_unigene131641
ATGGGACTCATTATTCTGCCAAGGGTGGGGTTTTCTGCGAAGGTCGAAGGTTGAGGCTTTTACAGATTTATGAGAATGGCGGAAAGGGGAGGTGGATTCGGACACGGAGGGGACAGGAGAGGTAGAAGTGATGGAGATCACGGGGATCGTCACAAAGCATGGCCGTCTGGTAAGAGAAGGGAAAATCCGTTCCCTCTAGCAAATAATCTATCTTTTCTCGTTAGCTGTGCAGGAGCAACAGATCGTGGAGGCCATGCTGGGTCCTCAACTGAAGGATGAGGTCGTGAAGATCATTCCTGTGCAGAAACAGACGAGGGTCAGGTAGAGGACTCGATTCAAAACATTCGTTGTTGTGGGTGCTCAAATGCCCACGAATGGCTTGGGATCAATTGCTGCAAAGAGGTGGCCGCGCGTCTCCGAAGAAGGTTCTGCAGTTTGCTGGGATCGAAGATGTGTTCACCTTCTTTCGAAGATCCACCTAAGG

Ace file of the UniGene sp_v3.0_unigene131641

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S2 n=11 Tax=Endopterygota RepID=E2ACC9_9HYME	-	-	2.0e-11	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	40S ribosomal protein S2	-	-	3.936e-11	-

Source	Gene names
Sma3	At1g58380; At1g58684; At1g58983; At1g59359; At1g59359 orthologue; At2g41840; At3g57490; CHLREDRAFT_195602; F19C14.1; F9K23.9; GSVIVT00025575001; LOC_Os03g59310; MICPUCDRAFT_49763; MICPUN_90856; OJ1119_B04.29; OSJNBa0059E14.8; OSTLU_18532; Os03g0807800; Os

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S5	IPR000851	-	-
Sma3	Ribosomal protein S5, C-terminal	IPR005324	-	-
Sma3	Ribosomal protein S5, eukaryotic/archaeal	IPR005711	-	-
Sma3	Ribosomal protein S5, N-terminal	IPR013810	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Ribosomal protein S5, N-terminal, conserved site	IPR018192	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57490.1	Ribosomal protein S5 family protein chr3:21279824-21280887 REVERSE LENGTH=276	2.0e-12	62%
RefSeq	Arabidopsis thaliana	NP_191308.1	40S ribosomal protein S2-4 [Arabidopsis thaliana]	3.0e-12	62%
RefSeq	Populus trichocarpa	XP_002298397.1	predicted protein [Populus trichocarpa]	1.0e-12	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRU6

Fln msg: Distance to subject end: 118 aas, your sequence is shorter than subject: 138 - 232

Fln protein: MRMAERGGGFGHGGDRRGRSDGDHGDRHKAWPSGKRRENPFPLANNLSFLVSCAGATDRGGHAGSSTEG*GREDHSCAETDEGQVEDSIQNIRCCGCSNAHEWLGINCCKEVAARLRRRFCSLLGSKMCSPSFEDPPK

Protein Length: 139

Fln nts: ATGGGACTCATTATTCTGCCAAGGGTGGGGTTTTCTGCGAAGGTCGAAGGTTGAGGCTTTTACAGATTT_-_ATGAGAATGGCGGAAAGGGGAGGTGGATTCGGACACGGAGGGGACAGGAGAGGTAGAAGTGATGGAGATCACGGGGATCGTCACAAAGCATGGCCGTCTGGTAAGAGAAGGGAAAATCCGTTCCCTCTAGCAAATAATCTATCTTTTCTCGTTAGCTGTGCAGGAGCAACAGATCGTGGAGGCCATGCTGGGTCCTCAACTGAAGGATGAGGTCGTGAAGATCATTCCTGTGCAGAAACAGACGAGGGTCAGGTAGAGGACTCGATTCAAAACATTCGTTGTTGTGGGTGCTCAAATGCCCACGAATGGCTTGGGATCAATTGCTGCAAAGAGGTGGCCGCGCGTCTCCGAAGAAGGTTCTGCAGTTTGCTGGGATCGAAGATGTGTTCACCTTCTTTCGAAGATCCACCTAAGG

Fln Alignment:

AllPine_a_rep_c85158___KAWPSGKRRENPFPLANNLSFLVSCAGATDRGGHAGSSTEG*GREDHSCAETDEGQVEDSIQNIRCCG
A9NRU6________________EARPPGKRRQNPFPRAN-LSLLVGREGAPDRGGHARSPVEGRGHEDHACAKTDEGRAEDSIQGLRCCG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
112	33		66		0.997476
118	66		33		0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain