SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131398

Length: 399 nt

UniGene Fasta

>sp_v3.0_unigene131398
TTTGTTGGAAACTGTCAAACTATATATTCCACAAAATTAATAGTCTTTGAACAGCCATTAAATTCTAAAAGCATATAATGGAACTTTTGTTGCAATGAATCACCGGAGCTGAGATGATGTCATTCCTTGATGGATTCCCTGGTTACAACCGGGTCATAGTAAAAAGTGATGATAAGCACAAGACAGCCTTTGTTACACCTTAGGGTACTTATGAATATCGAAGAATGCCAATTGGACTAATCAATGCAGATGCTACATTCCAAAGCGCCATGAATTATGCTTTCAAAGACATCATGAGAAAGATTATTGAAATTTACCAAGATGATTTGACAGTATACTCCAAGCAGTGGGCACCCCAATATCTCATCTTAAACATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v3.0_unigene131398

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR	-	-	1.0e-17	41%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	0.0	41%

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002336419.1	predicted protein, partial [Populus trichocarpa]	5.0e-13	53%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: P31843

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, atg_distance in limit (1-15): atg_distance = 4, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 95 - 142

Fln protein: MMSFLDGFPGYNRVIVKSDDKHKTAFVTP*GTYEYRRMPIGLINADATFQSAMNYAFKDIMRKIIEIYQDDLTVYSKQWAPQYLILNMSDSQGHD

Protein Length: 96

Fln nts: TTTGTTGGAAACTGTCAAACTATATATTCCACAAAATTAATAGTCTTTGAACAGCCATTAAATTCTAAAAGCATATAATGGAACTTTTGTTGCAATGAATCACCGGAGCTGAG_-_ATGATGTCATTCCTTGATGGATTCCCTGGTTACAACCGGGTCATAGTAAAAAGTGATGATAAGCACAAGACAGCCTTTGTTACACCTTAGGGTACTTATGAATATCGAAGAATGCCAATTGGACTAATCAATGCAGATGCTACATTCCAAAGCGCCATGAATTATGCTTTCAAAGACATCATGAGAAAGATTATTGAAATTTACCAAGATGATTTGACAGTATACTCCAAGCAGTGGGCACCCCAATATCTCATCTTAAACATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

AllPine_a_c84721___LDGFPGYNRVIVKSDDKHKTAFVTP*GTYEYRRMPIGLINADATFQSAMNYAFKDIMRKIIEIYQDDLTVYS
P31843________________LDLRSGYWQVRIAKGDEPKTTCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain