SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131328

Length: 1183 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene131328

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein phosphatase 2C 15 [Arabidopsis thaliana] ref\|NP_001031252.1\| putative protein phosphatase 2C 15 [Arabidopsis thaliana] sp\|Q9M9C6.1\|P2C15_ARATH RecName: Full=Probable protein phosphatase 2C 15; Short=AtPP2C15 gb\|AAF26041.1\|AC015986_4 putat	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Protein phosphatase, putative	-	-	2.831e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	1.278e-18	-

Source	Gene names
Sma3	AT1G68410; At1g09160; At1g47380; At1g68410; B1045B05.36; CaMPP; GSVIVT00005631001; GSVIVT00014800001; GSVIVT00022659001; GSVIVT00030384001; H0818E04.11; LOC_Os01g32964; LOC_Os02g35910; LOC_Os03g18970; LOC_Os03g27780; LOC_Os04g37660; LOC_Os09g28560; MtrDRA

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	G-patch domain	IPR000467	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR010822	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Pyruvate kinase, barrel	IPR015793	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G68410.1	Protein phosphatase 2C family protein chr1:25650262-25652255 REVERSE LENGTH=436	69%
RefSeq	Arabidopsis thaliana	NP_177008.1	putative protein phosphatase 2C 15 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002312412.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLF8

Fln msg: Overlapping hits, possible frame ERROR between 860 and 856, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 322 - 436

Fln protein: VIYIWCTILLQNGLSQTYTCSFFRKSTNNLKITVLKFYLQGLY*A*HKSSYILSLSCLMVMLAFKAIF*TELFSYWNFQQIFQRL*FGTFSLYL*IGPLRCWPGGLCLSRSIGDMDVGEFIVPIPHVKQVKLSNAGGRLIIATDGVWDALSSEKAANCCRGLPAELAAKQIVKEALRMRGLRDDTTCIVVDLIPPEKSAPPAPVKKEGKFKNFF*RKSTDSSSKSVEKQQNIDIVQEIFEEGSAMLAERLGSEYTVQTVSGLFACAVCQTDITPSEGISVHAGSxxxRKYARSWEGPFLCSSCKLKKDAMEGKRSSRVTAT*

Protein Length: 323

Fln nts: TAGTTATTTACATATGGTGTACCATTCTGCTACAAAATGGCCTATCCCAGACTTACACTTGCAGTTTCTTTCGTAAAAGTACTAATAATTTAAAAATTACTGTGCTTAAATTTTATCTACAAGGCCTCTATTAGGCTTGACATAAAAGCTCTTATATTTTATCTCTCTCATGTTTAATGGTCATGCTTGCTTTTAAAGCCATTTTCTAAACTGAATTGTTCTCTTACTGGAATTTTCAACAAATTTTTCAACGGCTGTAATTTGGAACATTTTCTTTATACTTGTAGATTGGACCATTGAGATGTTGGCCAGGAGGTCTCTGTCTGTCTAGGTCTATTGGGGATATGGATGTGGGCGAGTTCATTGTACCTATACCTCATGTAAAACAAGTGAAGCTATCGAATGCTGGAGGAAGGCTTATCATTGCAACTGATGGTGTTTGGGATGCATTGAGCTCTGAGAAGGCTGCAAATTGCTGCCGAGGCTTGCCAGCAGAACTTGCTGCAAAACAAATTGTTAAGGAGGCTTTGAGGATGAGAGGACTTAGGGACGACACTACATGCATTGTAGTGGATTTGATCCCACCTGAGAAATCTGCACCACCAGCGCCAGTTAAGAAGGAAGGCAAATTTAAGAATTTTTTCTGAAGGAAATCCACTGATTCATCGTCTAAGTCAGTTGAAAAGCAGCAAAATATAGACATTGTCCAGGAAATCTTTGAGGAGGGGTCAGCAATGCTCGCTGAAAGGCTGGGCTCAGAATATACGGTGCAGACAGTATCAGGATTGTTTGCTTGTGCTGTCTGTCAAACTGACATCACACCTAGTGAGGGTATTTCTGTGCATGCTGGATCCxxxxxxxxxAGGAAATATGCGCGCTCTTGGGAAGGCCCCTTTCTATGTTCAAGCTGTAAATTGAAGAAAGATGCAATGGAAGGCAAGCGATCATCAAGAGTGACAGCAACATAAATATCATTCGGGTTAGGCTGAATGCACGTCCTATGACCATCTCATGTGATCTCAACTTCCAGACTTTGGAGGCACAGTTCTGGTTTTGTTGTAAATTGGTTGAGTATAAACTAATGCACTCCATTCCACATGACTTTCAATGGAGATGGTAGTGATGAGAAAAAAGATAATTTGCTAAAACAATTGGGCTATTATTAATAATTGTGTTAAGAGTAAA

Fln Alignment:

AllPine_a_c84584___IGPLRCWPGGLCLSRSIGDMDVGEFIVPIPHVKQVKLSNAGGRLIIATDGVWDALSSEKAANCCRGLPAELAAKQIVKEALRMRGLRDDTTCIVVDLIPPEKSAPPAPVKKEGKFKNFF*RKSTDSSSKSVEKQQNIDIVQEIFEEGSAMLAERLGSEYTVQTVSGLFACAVCQTDITPSEGISVHAGSxxRKYARSWEGPFLCSSCKLKKDAMEGKRSSRVTAT
B8LLF8________________IGPLRCWPGGLCLSRSIGDMDVGEFIVPIPHVKQVKLSNAGGRLIIATDGVWDALSSEKAANCCRGLPAELAAKQIVKEALRIRGLRDDTTCIVVDLIPPEKSAPPAPVKKQSKFKSLFRRKSTDSTSKTVEKQQNIDIVQEIFEEGSAMLAERLGSEYAVHTVSGLFACAVCQTDITPSEGISVHAGSxxSGNMHSWEGPFLCASCKLKKDAMEGKRSSRTTAT

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
228		50		50	1.0
236	50	50			1.0
237		50		50	1.0
238	50		50		1.0
320	50		50		1.0
406		60	40		1.0
409			40	60	1.0
559	11		88		0.991528

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain