SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131312

Length: 451 nt

UniGene Fasta

>sp_v3.0_unigene131312
TTTTAGGATGCGTGGAGTCCGGCAAATTGAAGGTGAACCAGGATTTGAAAGCTAAGCTTTCACTGATACTAATAAAACTTATTAAGATTGCTGCCGTACCTTTGGCCACAGTTGGGATTTGCATAGAATTCCTTTTAAACCTGCTTTCTCACAATGGTGGACTGCTCAAAACGTTGTTCAGGCTATTCACTGGCAGAAACATCGTTATACCGAGAAGGGGGTCCGAGACTTTTCTAAGCTTTGTGGGCCTTCTTGAGCATCGCATAAATTTGTATGATGGAAGAACACACAAATGTGGGTTAACGAGAAATCATTTAATAAACAGTGGGGGTATTAACTCAACCATTGAAGGTGGGAGCAGATTCTACGCAGATCTTTGCGTTATGGCTTCAACGGCAGTTTATGAAAATGAACTGGTTATCAGAAACAGAGTTACAAAGCACTGGAAGAT

Ace file of the UniGene sp_v3.0_unigene131312

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipase n=1 Tax=Ricinus communis RepID=Q5S8F1_RICCO	-	-	2.0e-10	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G14360.1	alpha/beta-Hydrolases superfamily protein chr3:4791596-4793534 FORWARD LENGTH=518	3.0e-13	45%
RefSeq	Arabidopsis thaliana	NP_566484.2	lipase class 3 family protein [Arabidopsis thaliana]	4.0e-13	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LK97

Fln msg: Distance to subject end: 338 aas, your sequence is shorter than subject: 149 - 518

Fln protein: LGCVESGKLKVNQDLKAKLSLILIKLIKIAAVPLATVGICIEFLLNLLSHNGGLLKTLFRLFTGRNIVIPRRGSETFLSFVGLLEHRINLYDGRTHKCGLTRNHLINSGGINSTIEGGSRFYADLCVMASTAVYENELVIRNRVTKHWK

Protein Length: 150

Fln nts: TTTTAGGATGCGTGGAGTCCGGCAAATTGAAGGTGAACCAGGATTTGAAAGCTAAGCTTTCACTGATACTAATAAAACTTATTAAGATTGCTGCCGTACCTTTGGCCACAGTTGGGATTTGCATAGAATTCCTTTTAAACCTGCTTTCTCACAATGGTGGACTGCTCAAAACGTTGTTCAGGCTATTCACTGGCAGAAACATCGTTATACCGAGAAGGGGGTCCGAGACTTTTCTAAGCTTTGTGGGCCTTCTTGAGCATCGCATAAATTTGTATGATGGAAGAACACACAAATGTGGGTTAACGAGAAATCATTTAATAAACAGTGGGGGTATTAACTCAACCATTGAAGGTGGGAGCAGATTCTACGCAGATCTTTGCGTTATGGCTTCAACGGCAGTTTATGAAAATGAACTGGTTATCAGAAACAGAGTTACAAAGCACTGGAAGAT

Fln Alignment:

AllPine_a_c84555___VGICIEFXXXXXXXXXXXXKTLFRLFTG--RNIVIPRRGSETFLSFVGLLEHRINLYDGRTHKCGLTRNHLINSGGINSTIEGGSRFYADLCVMASTAVYENELVIRNRVTKHWK
B8LK97________________LGTWIEFLLNLLSQNGGVLKTLFGLLNGEGRDIVIPRRGSETFLSLIGLIEHRKNLYDG-----GITGNHLISSGVIDSTIKPGNRSYADLCVMASAVAYENKLVIRNRVTEHWK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain