SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131256

Length: 483 nt

UniGene Fasta

>sp_v3.0_unigene131256
TCTCAAGCCAGACATCAGCGCACCAGGTCTGAACATCATTGCTGCATGGGATCCTCCCGATACGGGATTTATAGACACAGTTCTTTCAGAGACGATGTCTACCACATTTTTACATGATGTCTGGAACTTCTGTAGCAGTTCCTCATGTTAGCGGAGCTGCTGCATTTTTAAAATCTATGAATCCTACTTGGAGCCCCTCTGTTATCAGATCAGCCCTGATGACAACAGCCATTGTTAGGAACAATATGGGAAAATTTTTGAATGGGACGCCATTTGATTTTGGAGCGGGAGTGGTAAATCCAATCGGAGCTCTGCAACCAGGACTTGTATATGAAACAAAAATCGATGATTACTTCCACTTTCTGTGTAATTACGGTCTGGACACTGAGAATATCAAACTCATCGCTGCGAATAAAACCTATAGGTGTCCATCCGGTGCAAAGGTGGATCTGATCAGTAACATGAACTATCCAAGTATAGCCA

Ace file of the UniGene sp_v3.0_unigene131256

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Subtilisin-like protein n=1 Tax=Picea abies RepID=Q40764_PICAB	-	-	0.0	82%
FL-Next	tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	66%
Sma3	Xylem serine proteinase 1, putative	-	-	9.766e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cucumisin.	EC:3.4.21.25	-	4.654e-11	-

Source	Gene names
Sma3	AT4g34980; At1g20160; At4g34980; GSVIVT00014361001; GSVIVT00018382001; GSVIVT00029050001; GSVIVT00033954001; GSVIVT00034063001; GSVIVT00036104001; LOC_Os03g13930; M4E13.40; Os03g0242900; Os06g0624100; OsI_01395; OsI_10711; OsI_23755; OsI_31804; OsJ_10100;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	plant-type cell wall modification	GO:0009827	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20160.1	ATSBT5.2 Subtilisin-like serine endopeptidase family protein chr1:6990852-6993854 REVERSE LENGTH=769	3.0e-32	46%
RefSeq	Arabidopsis thaliana	NP_564107.1	Subtilisin-like serine endopeptidase-like protein [Arabidopsis thaliana]	4.0e-32	46%
RefSeq	Populus trichocarpa	XP_002307740.1	predicted protein [Populus trichocarpa]	7.0e-36	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q40764

Fln msg: Overlapping hits, possible frame ERROR between 109 and 108, Distance to subject end: 95 aas, your sequence is shorter than subject: 161 - 779

Fln protein: LKPDISAPGLNIIAAWDPPDTGFIDTVLSETMSTTxxYMMSGTSVAVPHVSGAAAFLKSMNPTWSPSVIRSALMTTAIVRNNMGKFLNGTPFDFGAGVVNPIGALQPGLVYETKIDDYFHFLCNYGLDTENIKLIAANKTYRCPSGAKVDLISNMNYPSIA

Protein Length: 162

Fln nts: TCTCAAGCCAGACATCAGCGCACCAGGTCTGAACATCATTGCTGCATGGGATCCTCCCGATACGGGATTTATAGACACAGTTCTTTCAGAGACGATGTCTACCACAxxxxxxTACATGATGTCTGGAACTTCTGTAGCAGTTCCTCATGTTAGCGGAGCTGCTGCATTTTTAAAATCTATGAATCCTACTTGGAGCCCCTCTGTTATCAGATCAGCCCTGATGACAACAGCCATTGTTAGGAACAATATGGGAAAATTTTTGAATGGGACGCCATTTGATTTTGGAGCGGGAGTGGTAAATCCAATCGGAGCTCTGCAACCAGGACTTGTATATGAAACAAAAATCGATGATTACTTCCACTTTCTGTGTAATTACGGTCTGGACACTGAGAATATCAAACTCATCGCTGCGAATAAAACCTATAGGTGTCCATCCGGTGCAAAGGTGGATCTGATCAGTAACATGAACTATCCAAGTATAGCCA

Fln Alignment:

AllPine_a_c84420___LKPDISAPGLNIIAAWDPPDTGFIDTVLSETMSTTxYMMSGTSVAVPHVSGAAAFLKSMNPTWSPSVIRSALMTTAIVRNNMGKFLN------GTPFDFGAGVVNPIGALQPGLVYETKIDDYFHFLCNYGLDTENIKLIAANKTYRCPSGAKVDLISNMNYPSIA
Q40764________________LKPDISAPGVNIIAAWNPPNQSDEDTVVSEMTPSTxNMMSGTSVAVPHVTGAAAFVKSINPTWSSSAIRSALMTTAIVRNNMGKLLTNESDIPGTPFDFGAGVVNPIGALQPGLVYETSIDDYFHFLCNYGLDSENIKIIAANESYKCPSGVNADLISNMNYPSIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain