SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131238

Length: 188 nt

UniGene Fasta

>sp_v3.0_unigene131238
CAACCTTTTCCAGAAGGACATCATTTCACGGCGATCATAATTTCCGGCATGGGTTTCTTTACTGATGCTTATGATCTGTTCTGCATTACAACTGTCACGTTTCTAACTCCGGAGACGAAAGGCAGATCTCTTGAGGAGATCTCCGGCGAAAACGGTGACGATGATCAAGAAGAGGCACCGCAGTTTCG

Ace file of the UniGene sp_v3.0_unigene131238

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative phosphate transporter n=1 Tax=Cryptomeria japonica RepID=Q1XG57_CRYJA	-	-	1.0e-06	86%
FL-Next	tr=Putative phosphate transporter; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	86%
Sma3	Phosphate transporter	-	-	2.196e-33	-

Source	Gene names
Sma3	At2g38940; At3g54700; EcPT1; EcPT2; EdPT1; GSVIVT00020257001; GSVIVT00028602001; GSVIVT00029479001; LOC_Os03g04360; LOC_Os03g05610; LePT1; LjPT1; LjPT2; MtPT6; NtPT2; OSJNBb0050N02.17; Os03g0136400; Os03g0150500; OsI_09915; OsI_10040; OsJ_008981; OsJ_0090

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	phosphate ion transport	GO:0006817	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Phosphate permease	IPR004738	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1XG57

Fln msg: Distance to subject end: 468 aas, atg_distance in limit (1-15): atg_distance = 14, W2: There is no M at the beginning, your sequence is shorter than subject: 62 - 544

Fln protein: QPFPEGHHFTAIIISGMGFFTDAYDLFCITTVTFLTPETKGRSLEEISGENGDDDQEEAPQF

Protein Length: 63

Fln nts: CAACCTTTTCCAGAAGGACATCATTTCACGGCGATCATAATTTCCGGCATGGGTTTCTTTACTGATGCTTATGATCTGTTCTGCATTACAACTGTCACGTTTCTAACTCCGGAGACGAAAGGCAGATCTCTTGAGGAGATCTCCGGCGAAAACGGTGACGATGATCAAGAAGAGGCACCGCAGTTTCG

Fln Alignment:

AllPine_a_rep_c84384___HHFTAIIISGMGFFTDAYDLFCITTVTFL
Q1XG57________________YHFTAIIIAGMGFFTDAYDLFCISTVTKL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain