SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131201

Length: 447 nt

UniGene Fasta

>sp_v3.0_unigene131201
TCCGTCACGAATTGCCATCTTCTCCAAGAGTTACCTGATGACTTGGGGAATTTGAGATCATTGAAGCTATTGAGGTTGTCTGCATGTCTGAGCTTGTCAAAGCTTCCACCTTCCATTTGCGACCTTCGTGACCTAAAATTTCTCGATATTTCACAGTGCAGGGGTTTGAAGTGCTTTCCCAGCGAATTTTATCAGCTATCAAATCTAGAGACGCTGGACATGAGGGGTTGCGAAAAGCTAAAGAAGCTACCTGAAGGAGTAACCAAACTTGGATCTTTAAAAGCTTATAATCTGTGATGAGAACACTAAACGACAGTGGCTGTCTATCAAAGCCTCTGCCATGCCTAAACTCACAGTTGTCGTTGTTGAAGAACGCTTTGAATTGGACTGGCTTTACAATTAACAAAGTTCATGAGACATCTTCTTGCCTTCTGCAACTACCTTTAG

Ace file of the UniGene sp_v3.0_unigene131201

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS/LRR [Pinus taeda]	-	-	8.0e-22	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Nbs-lrr resistance protein	-	-	4.598e-06	-

Source	Gene names
Sma3	GSVIVT00014747001; LOC_Os12g39620; LRR1; Os12g0586000; OsI_38915; OsJ_36681; POPTRDRAFT_710696; POPTRDRAFT_826770; RCOM_1591970; RGC-CC_1; VITISV_006255;

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat-containing protein 40	IPR015766	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G33560.1	ADR1 Disease resistance protein (CC-NBS-LRR class) family chr1:12169092-12171878 FORWARD LENGTH=787	4.0e-15	47%
RefSeq	Arabidopsis thaliana	NP_174620.2	disease resistance protein ADR1 [Arabidopsis thaliana]	5.0e-15	47%
RefSeq	Populus trichocarpa	XP_002327103.1	nbs-lrr resistance protein [Populus trichocarpa]	4.0e-19	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKQ3

Fln msg: Separated hits, possible frame ERROR between 279 and 287, your sequence is shorter than subject: 135 - 813

Fln protein: SVTNCHLLQELPDDLGNLRSLKLLRLSACLSLSKLPPSICDLRDLKFLDISQCRGLKCFPSEFYQLSNLETLDMRGCEKLKKLPEGVTKLGSxxxxIICDENTKRQWLSIKASAMPKLTVVVVEERFELDWLYN*

Protein Length: 136

Fln nts: TCCGTCACGAATTGCCATCTTCTCCAAGAGTTACCTGATGACTTGGGGAATTTGAGATCATTGAAGCTATTGAGGTTGTCTGCATGTCTGAGCTTGTCAAAGCTTCCACCTTCCATTTGCGACCTTCGTGACCTAAAATTTCTCGATATTTCACAGTGCAGGGGTTTGAAGTGCTTTCCCAGCGAATTTTATCAGCTATCAAATCTAGAGACGCTGGACATGAGGGGTTGCGAAAAGCTAAAGAAGCTACCTGAAGGAGTAACCAAACTTGGATCTTTxxxxxxxxxTATAATCTGTGATGAGAACACTAAACGACAGTGGCTGTCTATCAAAGCCTCTGCCATGCCTAAACTCACAGTTGTCGTTGTTGAAGAACGCTTTGAATTGGACTGGCTTTACAATTAACAAAGTTCATGAGACATCTTCTTGCCTTCTGCAACTACCTTTAG

Fln Alignment:

AllPine_a_rep_c84303___SVTNCHLLQELPDDLGNXXXXXXXXXXXXXXXXXXPPSICDLRDLKFLDISQCRGLKCFPSEFYQLSNLETLDMRGCEKLKKLPEGVTKLGSLxxxIICDENTKRQWLSIKASAMPKLTVVVVEERFELDWLYN
B8LKQ3________________SVTNCHLIQKLPDDLGKLRSLRMLRLSACLNLSMLPASICELHQLECLDISLCGSLKNFPNEFHRLSKLKMLDMRECSGLKKLPEALTKLRSLxxxVTCDEHTERQWLSIKASAMPNLIIVVVKECFNLDWLEN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
22	50	50			1.0
39			50	50	1.0
40		50	50		1.0
51	50			50	1.0
121	50		50		1.0
127		66	33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain