SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131189

Length: 225 nt

UniGene Fasta

>sp_v3.0_unigene131189
AGCCCATTGTGCTTCACGCTCCTCTTTACCATAGTCCTTCTTAGATGTGAAGGGCAGCTACCGAGAGTTGTCAGAAATTGCTGAACAAGCAAAGAGGCGTGCTGAAGTTGCCAGGCTTAGGGAGTTGAATACATTGAAGGGGCATGTGGAGTCTGTGGTCAAGCTGAAGGGTCTTGATATTAATACTATCCAACAGTCTTACACTGTGTGATTTTAATGTATTGG

Ace file of the UniGene sp_v3.0_unigene131189

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative plasma membrane H+-ATPase n=1 Tax=Zostera marina RepID=Q43275_ZOSMR	-	-	2.0e-19	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Plasma membrane H+-ATPase	-	-	4.31e-39	-

Source	ECs	Term	Type	e value	Identity
Sma3	Adenosinetriphosphatase.	EC:3.6.1.3	-	2.342e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Purine metabolism	00230		2.342e-14	%
Sma3	Transferred entry: 3.6.3.6.	EC:3.6.1.35	-	6.685e-28	-
Sma3	Proton-exporting ATPase.	EC:3.6.3.6	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		0.0	%

Source	Gene names
Sma3	AHA1; AHA11; AHA2; AHA3; AHA4; AHA5; AHA6; AHA8; AHA9; AT4G30190; ATP1; Aa_42640; At1g80660; At2g07560; At2g18960; At2g24520; At3g42640; At3g47950; At4g30190; At5g57350; At5g62670; BHA-1; Cr_42640; DcPA 1; DcPA 2; DcPA 3; DcPA 4; DcPA 5; DcPA 6; F19F24.16

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	hydrogen-exporting ATPase activity, phosphorylative mechanism	GO:0008553	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	proton transport	GO:0015992	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, plasma-membrane proton-efflux	IPR006534	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G24520.1	AHA5, HA5 H(+)-ATPase 5 chr2:10415522-10419730 FORWARD LENGTH=931	2.0e-22	86%
RefSeq	Arabidopsis thaliana	NP_180028.1	H(+)-ATPase 5 [Arabidopsis thaliana]	2.0e-22	86%
RefSeq	Populus trichocarpa	XP_002330804.1	autoinhibited H+ ATPase [Populus trichocarpa]	6.0e-24	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQS1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 70 - 955

Fln protein: AHCASRSSLP*SFLDVKGSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDINTIQQSYTV*

Protein Length: 71

Fln nts: AGCCCATTGTGCTTCACGCTCCTCTTTACCATAGTCCTTCTTAGATGTGAAGGGCAGCTACCGAGAGTTGTCAGAAATTGCTGAACAAGCAAAGAGGCGTGCTGAAGTTGCCAGGCTTAGGGAGTTGAATACATTGAAGGGGCATGTGGAGTCTGTGGTCAAGCTGAAGGGTCTTGATATTAATACTATCCAACAGTCTTACACTGTGTGA___TTTTAATGTATTGG

Fln Alignment:

AllPine_a_rep_c84282___KGSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDINTIQQSYTV
B8LQS1________________RSSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDIDTIQQSYTV

SNPs (tot: 4)

Position	A %	G %	T %	Probability
46	66	33		0.997455
47		33	66	0.997455
49	33		66	0.997476
54	33	66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain