SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131179

Length: 440 nt

UniGene Fasta

>sp_v3.0_unigene131179
ATGGGGGCAATTGGATCGTGAAAGGACGTCCATAAGGCGCTCTCAGTCGAATCCCATCGCATCTATATATGTTCGCGTCGTGACCTTGGCTGTCACTCAATCGTTTACCATAACTCAACAGGATGGACGGGAGGTCGCAGGATCGGGACTCTGCAGCGTCTCTGCGCCTGAAATTCGCTTATTATGTAACAGGCCATGGATTCGGCCACGCCACCCGAGTCGTGGAGGTGGCACGACATCTTGTTGCAGCAGGACATGAAGTTCATGTGGTTACTGGGGCTCCAGACTTTGTTTCACTAGTGAAATAAGTTCTTCTAACTTGTCCATTCGCAAGGTTTTGCTTGATTGTGGAGCTGTACAAGCAGATGCTTTGACTGTTGATCGACTTGCATCCTTAGAGAAGTATTCCCAGACAGCAGTTGTACCACGTGCCTCTTCGC

Ace file of the UniGene sp_v3.0_unigene131179

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	L-arabinokinase n=2 Tax=Arabidopsis RepID=ARAK_ARATH	-	-	7.0e-35	70%
FL-Next	sp=L-arabinokinase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%

Source	Gene names
Sma3	AT4g16130; At3g42850; At4g16130; F18P9_10; GSVIVT00017022001; GSVIVT00032365001; ISA1; OJ1123_E07.2; Op_42850; Os02g0141300; Os06g0702500; OsI_05805; OsI_24367; OsJ_05332; P0596H10.38-1; PHYPADRAFT_109068; PHYPADRAFT_176198; POPTRDRAFT_811685; RCOM_020534

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	L-arabinokinase activity	GO:0009702	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	phosphorylation	GO:0016310	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	GHMP kinase, ATP-binding, conserved site	IPR006203	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3		IPR012366	-	-
Sma3	Galactokinase, glycosyltransferase	IPR012369	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G16130.1	ARA1, ISA1, ATISA1 arabinose kinase chr4:9120875-9127656 FORWARD LENGTH=1039	5.0e-37	70%
RefSeq	Arabidopsis thaliana	NP_193348.1	arabinose kinase [Arabidopsis thaliana]	6.0e-37	70%
RefSeq	Populus trichocarpa	XP_002331441.1	predicted protein [Populus trichocarpa]	7.0e-30	83%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: O23461

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 293 and 293, Distance to subject end: 883 aas, atg_distance in limit (1-15): atg_distance = 13, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 109 - 1039

Fln protein: LNRMDGRSQDRDSAASLRLKFAYYVTGHGFGHATRVVEVARHLVAAGHEVHVVTGAPDFxxTSEISSSNLSIRKVLLDCGAVQADALTVDRLASLEKYSQTAVVPRASS

Protein Length: 110

Fln nts: ATGGGGGCAATTGGATCGTGAAAGGACGTCCATAAGGCGCTCTCAGTCGAATCCCATCGCATCTATATATGTTCGCGTCGTGACCTTGGCTGTCACTCAATCGTTTACCATAACTCAACAGGATGGACGGGAGGTCGCAGGATCGGGACTCTGCAGCGTCTCTGCGCCTGAAATTCGCTTATTATGTAACAGGCCATGGATTCGGCCACGCCACCCGAGTCGTGGAGGTGGCACGACATCTTGTTGCAGCAGGACATGAAGTTCATGTGGTTACTGGGGCTCCAGACTTTxxxxxxACTAGTGAAATAAGTTCTTCTAACTTGTCCATTCGCAAGGTTTTGCTTGATTGTGGAGCTGTACAAGCAGATGCTTTGACTGTTGATCGACTTGCATCCTTAGAGAAGTATTCCCAGACAGCAGTTGTACCACGTGCCTCTTCGC

Fln Alignment:

AllPine_a_c84264___SLNRLP*LNRMDGRSQDRDSAASLRLKFAYYVTGHGFGHATRVVEVARHLVAAGHEVHVVTGAPDFVFTSEISSSNLSIRKVLLDCGAVQADALTVDRLASLEKYSQTAVVPRA
O23461________________SSQRLPEKMRID--ENEGVSASSKHLVFAYYVTGHGFGHATRVVEVVRHLIAAGHDVHVVTGAPDFVFTSEIQSPRLKIRKVLLDCGAVQADALTVDRLASLEKYVETAVVPRA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
77	33		66		0.997476
80			66	33	0.997476
82		33	66		0.997476
83	66			33	0.997476
85		66	33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain