SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131156

Length: 226 nt

UniGene Fasta

>sp_v3.0_unigene131156
CGTCGTGACCTTGGCTGTCACTCAATGTTTGTCCATGATGGTCTTGTTCATCGCCGCTTTCCTGTTGGGCCTATTGCTGATGTTCCATATCTTCTTAAGGTAGCAGCTGCACATCAGCTTCATCACGCAAACAAGTTTAATGGTGTACCATATGGTCTTTTCCTTGGACCAAAAGAACTGGAAGAGGAGGTTGGAGGCCGTGAAGAGCTAGAGAAATTGTATAATA

Ace file of the UniGene sp_v3.0_unigene131156

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-carotene hydroxylase n=3 Tax=Arabidopsis RepID=Q9SZZ8_ARATH	-	-	5.0e-21	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Beta-carotene hydroxylase	-	-	0.0	-

Source	Gene names
Sma3	AT4g25700; At4g25700; At5g52570; BCH; BCH2Cs; CHLREDRAFT_164400; CHX1; CHX2; CHXB1; CHXB2; CHYB; Chyb; CitHYb; CrtR-b1; CrtR-b2; DK-Hyb; GSVIVT00002556001; GSVIVT00037718001; GenCHYB; H0404F02.11; HYB; HYD3; HYD4; L73G19.80; LOC_Os03g03370; LOC_Os10g38940

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	carotene beta-ring hydroxylase activity	GO:0010291	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	carotene metabolic process	GO:0016119	Biological Process	-
Sma3	xanthophyll biosynthetic process	GO:0016123	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	Fatty acid hydroxylase	IPR006694	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G25700.1	BETA-OHASE 1, B1, chy1, BCH1 beta-hydroxylase 1 chr4:13094142-13095866 REVERSE LENGTH=310	6.0e-28	87%
RefSeq	Arabidopsis thaliana	NP_194300.1	beta-carotene hydroxylase [Arabidopsis thaliana]	8.0e-28	87%
RefSeq	Populus trichocarpa	XP_002298016.1	predicted protein, partial [Populus trichocarpa]	1.0e-26	83%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXM1

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 75 - 330

Fln protein: RRDLGCHSMFVHDGLVHRRFPVGPIADVPYLLKVAAAHQLHHANKFNGVPYGLFLGPKELEEEVGGREELEKLYN

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTTGTCCATGATGGTCTTGTTCATCGCCGCTTTCCTGTTGGGCCTATTGCTGATGTTCCATATCTTCTTAAGGTAGCAGCTGCACATCAGCTTCATCACGCAAACAAGTTTAATGGTGTACCATATGGTCTTTTCCTTGGACCAAAAGAACTGGAAGAGGAGGTTGGAGGCCGTGAAGAGCTAGAGAAATTGTATAATA

Fln Alignment:

AllPine_a_rep_c84214___GCHSMFVHDGLVHRRFPVGPIADVPYLLKVAAAHQLHHANKFNGVPYGLFLGPK
A9NXM1________________GMAYMFVHDGLVHRRFPVGPIADVPYLLKVAAAHQLHHADKFNGVPYGLFLGPK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
42			33	66	0.997456
99	33		66		0.997455
130	66		33		0.997456
132		66		33	0.997476
147	66		33		0.997464
150	66			33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain