SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131131

Length: 238 nt

UniGene Fasta

>sp_v3.0_unigene131131
ATGGGGCAAGCACAATATCTGCCCTCCTCTGTGATTGCTTCTTTTCAGTGTTTTTTGGGTTTGAATTTTCCTTTACACAAAGATGGCAGTGCCCGTTATTGACATAAAGAAGCTGTTGGATGGAGAAGAAAGGGAGATGACCATGGACCAGATACACAAAGCCTGCCAAGAATGGGGTTTCTTTCAGCTTGTTAACCACGGCATACCGCACAGTCTTCTTGATAGAGTGAAGGAATTG

Ace file of the UniGene sp_v3.0_unigene131131

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	1-aminocyclopropane-1-carboxylate oxidase 2 n=2 Tax=Pinus taeda RepID=D4N2S3_PINTA	-	-	5.0e-18	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	1-aminocyclopropane-1-carboxylate oxidase	-	-	1.074e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aminocyclopropanecarboxylate oxidase.	EC:1.14.17.4	-	1.33e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Cysteine and methionine metabolism	00270	1.33e-06	%
Sma3	Biosynthesis of plant hormones	01070	1.33e-06	%
Sma3	Metabolic pathways	01100	1.33e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	1.33e-06	%

Source	Gene names
Sma3	ACO; ACO1; ACO15; ACO2; ACO31; ACO4; ACO6; ACO7; At1g77330; F2P24.4; GSVIVT00015445001; Ls-ACO3; MAO1A; MAO1B; OJ1504_G04.8; OJ1504_G04.9; Os05g0149300; Os05g0149400; OsI_18466; OsI_18467; OsJ_17129; OsJ_17130; POPTRDRAFT_559288; POPTRDRAFT_568162; POPTRD

Source	GOs	Term	Type	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	1-aminocyclopropane-1-carboxylate oxidase activity	GO:0009815	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	L-ascorbic acid binding	GO:0031418	Molecular Function	-
Sma3	ethylene biosynthetic process	GO:0009693	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G77330.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein chr1:29063215-29064447 REVERSE LENGTH=307	9.0e-18	67%
RefSeq	Arabidopsis thaliana	NP_565154.1	aminocyclopropanecarboxylate oxidase [Arabidopsis thaliana]	1.0e-17	67%
RefSeq	Populus trichocarpa	XP_002307461.1	1-aminocyclopropane-1-carboxylate [Populus trichocarpa]	2.0e-15	62%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ40

Fln msg: Distance to subject end: 280 aas, your sequence is shorter than subject: 52 - 332

Fln protein: MAVPVIDIKKLLDGEEREMTMDQIHKACQEWGFFQLVNHGIPHSLLDRVKEL

Protein Length: 53

Fln nts: ATGGGGCAAGCACAATATCTGCCCTCCTCTGTGATTGCTTCTTTTCAGTGTTTTTTGGGTTTGAATTTTCCTTTACACAAAG_-_ATGGCAGTGCCCGTTATTGACATAAAGAAGCTGTTGGATGGAGAAGAAAGGGAGATGACCATGGACCAGATACACAAAGCCTGCCAAGAATGGGGTTTCTTTCAGCTTGTTAACCACGGCATACCGCACAGTCTTCTTGATAGAGTGAAGGAATTG

Fln Alignment:

AllPine_a_rep_c84166___MAVPVIDIKKLLDGEEREMTMDQIHKACQEWGFFQLVNHGIPHSLLDRVKEL
B8LQ40________________MAVPVIDIKKLLDGEEREMTMEQIHKACQEWGFFQLVNHGIPHSLLDGVQEL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
124	66		33		0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain