SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131055

Length: 490 nt

UniGene Fasta

>sp_v3.0_unigene131055
TGATGCCCATTTCAGAACCAGAAGAATTCATGGCATGCTTTCTTCTGGTTCTGAAATGGGCATCAGGGATCCTGCTGGCTCTCATCTAACTTCCAGTAGTGTCTCACATTTCTCCATAGAAAATGGCTTGACAGTGAATACAAATGGCCAGGATGATCATACAAAAACTGCCCACAAAATCAATCATGATCCATGGTATCAGCTGGCTTCTTTGCTGGTTGTAAGTTTCAATGGAGGATATATTCTGGGATTCTCAAATTTTATCATGACACCTTTGGGATGGATATGGGGCACAGTTTTAATGGCCGTCCTAGCTGTTATATCACTCTATGCAAATTGTTTTCTGGCAAAACTGCATATAATAGATGGCAGACGGTTCATCAGATACAGAGATTTGATGGGTTTTACTTTAGGAAGGAAGATGTATTATATAACGTGCACTCTGCAGTTTCTCAACTTCATTCTGGGGAATATAGGATTCCTGCTGCTC

Ace file of the UniGene sp_v3.0_unigene131055

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proline transport protein-like n=2 Tax=Oryza sativa RepID=Q8L431_ORYSJ	-	-	2.0e-32	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	Proline transporter	-	-	9.324e-08	-

Source	Gene names
Sma3	At2g36590; At2g39890; At3g55740; B1026C12.12; B1417F08.37; F1I16_150; LOC_Os03g44230; OSJNBa0038E17.23; Os01g0908600; Os03g0644400; Os07g0100800; OsI_04856; OsI_12791; OsI_24564; OsJ_04479; OsJ_22765; OsproT; P0456E05.10; P0497A05.18; POPTRDRAFT_803283; P

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	L-proline transmembrane transporter activity	GO:0015193	Molecular Function	-
Sma3	proline transport	GO:0015824	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39890.1	PROT1, ATPROT1 proline transporter 1 chr2:16656022-16658202 FORWARD LENGTH=442	1.0e-32	51%
RefSeq	Arabidopsis thaliana	NP_181518.1	proline transporter 1 [Arabidopsis thaliana]	1.0e-32	51%
RefSeq	Populus trichocarpa	XP_002311196.1	proline transporter [Populus trichocarpa]	3.0e-31	49%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P182

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 152 - 247

Fln protein: MLSSGSEMGIRDPAGSHLTSSSVSHFSIENGLTVNTNGQDDHTKTAHKINHDPWYQLASLLVVSFNGGYILGFSNFIMTPLGWIWGTVLMAVLAVISLYANCFLAKLHIIDGRRFIRYRDLMGFTLGRKMYYITCTLQFLNFILGNIGFLLL

Protein Length: 153

Fln nts: TGATGCCCATTTCAGAACCAGAAGAATTCATGGC_-_ATGCTTTCTTCTGGTTCTGAAATGGGCATCAGGGATCCTGCTGGCTCTCATCTAACTTCCAGTAGTGTCTCACATTTCTCCATAGAAAATGGCTTGACAGTGAATACAAATGGCCAGGATGATCATACAAAAACTGCCCACAAAATCAATCATGATCCATGGTATCAGCTGGCTTCTTTGCTGGTTGTAAGTTTCAATGGAGGATATATTCTGGGATTCTCAAATTTTATCATGACACCTTTGGGATGGATATGGGGCACAGTTTTAATGGCCGTCCTAGCTGTTATATCACTCTATGCAAATTGTTTTCTGGCAAAACTGCATATAATAGATGGCAGACGGTTCATCAGATACAGAGATTTGATGGGTTTTACTTTAGGAAGGAAGATGTATTATATAACGTGCACTCTGCAGTTTCTCAACTTCATTCTGGGGAATATAGGATTCCTGCTGCTC

Fln Alignment:

AllPine_a_rep_c84014___DDHTKTAHKINHDPWYQLASLLVVSFNGGYILGFSNFIMTPLGWIWGTVLMAVLAVISLYANCFLAKLHIIDGRRFIRYRDLMGFTLGRKMYYITCTLQFLNFILGNIGFLLL
A9P182________________DDSRSTAHSISQDPWYQVGFILITSMNSAYVLGYSGIFMVPLGWVAGITGFIAAALISFYANYLLARLHQIDGLRHIRYRDLAGYIYGDNMYYFTWALQYINLFMSNVGYIIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain