SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130939

Length: 521 nt

UniGene Fasta

>sp_v3.0_unigene130939
ATTGTCAGGAGGGAGTACTTACAGAACCCGAGATGAAATAACAGGCGTCAGACAGGAGCGTGATCCAATTGAAAGGGTGTGTAAACTTGTGCTAGCCAATAACATAGCCACAGCAGCTGAATTGAAGGATATTGAAAGGAAGCAAAAGAAGTTGATGATGCAATTGCCCTGGCAAAGGAAAGTCCACTGCCAGATCCTTCAGACCTTTTTGCTCATGTATACGTAAAGGGGTTTGGGACTGAGGCATTCGGTGCAGATAGAAAGGAACTGAAAGGTTTATTGCCGTGATGAATGTTCTTTACAGTCCAATTTTTTGAGTTACAGTTGAGTAGCAAATAAGAAAGCAAATGTTCAGTGAAATTTATATTATTATTCATTGGGTGTAAGGGGTTACTGGGTCAATTCTTCCTGTTAAATTTTAATTGGCCATTCCATGGAAAGATACTTTGACGGGCAATATTTTGGTTTTGTTATTACTGCTATCTTCAATTCGCTGGCCTTTAACCATTTTTCAGGAAGTC

Ace file of the UniGene sp_v3.0_unigene130939

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial n=3 Tax=Solanum RepID=ODPA_SOLTU	-	-	2.0e-29	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	PDHE1-A	-	-	1.511e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pyruvate dehydrogenase (acetyl-transferring).	EC:1.2.4.1	-	8.106e-18	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	8.106e-18	%
Sma3	Citrate cycle (TCA cycle)	00020	8.106e-18	%
Sma3	Valine, leucine and isoleucine biosynthesis	00290	8.106e-18	%
Sma3	Pyruvate metabolism	00620	8.106e-18	%
Sma3	Butanoate metabolism	00650	8.106e-18	%
Sma3	Biosynthesis of phenylpropanoids	01061	8.106e-18	%
Sma3	Biosynthesis of terpenoids and steroids	01062	8.106e-18	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	8.106e-18	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	8.106e-18	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	8.106e-18	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	8.106e-18	%
Sma3	Biosynthesis of plant hormones	01070	8.106e-18	%
Sma3	Metabolic pathways	01100	8.106e-18	%
Sma3	Biosynthesis of secondary metabolites	01110	8.106e-18	%

Source	Gene names
Sma3	AT1G59900; At1g24180; At1g59900; E1aPDH; F23H11.21; F3I6.11; GSVIVT00025274001; GSVIVT00028924001; IAR4; OJ1136_C11.8; Os02g0739600; Os06g0246500; OsI_22361; OsJ_08320; OsJ_20802; P0684F11.25; PDH E1a-1; PDH E1a-2; PHYPADRAFT_105993; PHYPADRAFT_123902; PH

Source	GOs	Term	Type	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	-
Sma3	pyruvate dehydrogenase (acetyl-transferring) activity	GO:0004739	Molecular Function	-
Sma3	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	GO:0016624	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Dehydrogenase, E1 component	IPR001017	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y	IPR017597	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G59900.1	AT-E1 ALPHA, E1 ALPHA pyruvate dehydrogenase complex E1 alpha subunit chr1:22051368-22053660 FORWARD LENGTH=389	1.0e-29	72%
RefSeq	Arabidopsis thaliana	NP_176198.1	pyruvate dehydrogenase complex E1 alpha subunit [Arabidopsis thaliana]	2.0e-29	72%
RefSeq	Populus trichocarpa	XP_002311788.1	predicted protein [Populus trichocarpa]	1.0e-29	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWY7

Fln msg: Overlapping hits, possible frame ERROR between 151 and 136, your sequence is shorter than subject: 96 - 400

Fln protein: LSGGSTYRTRDEITGVRQERDPIERVCKLVLANNIATAAELKDIxxxxxxxDDAIALAKESPLPDPSDLFAHVYVKGFGTEAFGADRKELKGLLP*

Protein Length: 97

Fln nts: ATTGTCAGGAGGGAGTACTTACAGAACCCGAGATGAAATAACAGGCGTCAGACAGGAGCGTGATCCAATTGAAAGGGTGTGTAAACTTGTGCTAGCCAATAACATAGCCACAGCAGCTGAATTGAAGGATATTxxxxxxxxxxxxxxxxxxxxxGATGATGCAATTGCCCTGGCAAAGGAAAGTCCACTGCCAGATCCTTCAGACCTTTTTGCTCATGTATACGTAAAGGGGTTTGGGACTGAGGCATTCGGTGCAGATAGAAAGGAACTGAAAGGTTTATTGCCGTGATGAATGTTCTTTACAGTCCAATTTTTTGAGTTACAGTTGAGTAGCAAATAAGAAAGCAAATGTTCAGTGAAATTTATATTATTATTCATTGGGTGTAAGGGGTTACTGGGTCAATTCTTCCTGTTAAATTTTAATTGGCCATTCCATGGAAAGATACTTTGACGGGCAATATTTTGGTTTTGTTATTACTGCTATCTTCAATTCGCTGGCCTTTAACCATTTTTCAGGAAGTC

Fln Alignment:

AllPine_a_rep_c83782___GSTYRTRDEITGVRQERDPIERVCKLVLANNIATAAELKDIExxxxxEVDDAIALAKESPLPDPSDLFAHVYVKGFGTEAFGADRKELKGLLP
A9NWY7________________GSTYRTRDEISGVRQERDPIERVRKLVLAHNIATPAELKDIExxxxxEVDDAIALAKECSLPDSSELFSHVYVKGFGTEAFGADRKELKGLLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain