SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130859

Length: 361 nt

UniGene Fasta

>sp_v3.0_unigene130859
CGTCGTGACCTTGGCTGTCACTCATGCCCAGGCCATCATCCTTGTACTATGTTGTGTCGTATTAACAGAACCAGCATCTTTCGATACTGTGAAACCCCAGTTGCGTGACCTTGTCTGTCACTGCTAATTCCCTTATCTGCGCGCAACAATTTTTGTTCTTTTTTCCTCGTATATTGTTCCAGAATTCAACAAAGCAATGGATCCCCAGATCGATCCCCGCAGCGGATACTGCAGCTCCAACCAGACGTACTACAGCAAGCGAAAACCAGTTAATTTTCCCCAAGACGAATACCTGGATCTTCCCAGCTACGTTTCCTCGCTTCACCACAATGGCCAAATAGCCCTCATCGACTCTGCCACT

Ace file of the UniGene sp_v3.0_unigene130859

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	4-coumarate-CoA ligase-like protein [Arabidopsis thaliana]	-	-	2.0e-09	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G38120.1	4CL8 AMP-dependent synthetase and ligase family protein chr5:15213773-15216137 FORWARD LENGTH=550	1.0e-12	52%
RefSeq	Arabidopsis thaliana	NP_198628.2	4-coumarate--CoA ligase-like 8 [Arabidopsis thaliana]	1.0e-12	52%
RefSeq	Populus trichocarpa	XP_002307770.1	acyl:coa ligase [Populus trichocarpa]	3.0e-13	52%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP93

Fln msg: Distance to subject end: 483 aas, your sequence is shorter than subject: 55 - 548

Fln protein: MDPQIDPRSGYCSSNQTYYSKRKPVNFPQDEYLDLPSYVSSLHHNGQIALIDSAT

Protein Length: 56

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGCCCAGGCCATCATCCTTGTACTATGTTGTGTCGTATTAACAGAACCAGCATCTTTCGATACTGTGAAACCCCAGTTGCGTGACCTTGTCTGTCACTGCTAATTCCCTTATCTGCGCGCAACAATTTTTGTTCTTTTTTCCTCGTATATTGTTCCAGAATTCAACAAAGCA_-_ATGGATCCCCAGATCGATCCCCGCAGCGGATACTGCAGCTCCAACCAGACGTACTACAGCAAGCGAAAACCAGTTAATTTTCCCCAAGACGAATACCTGGATCTTCCCAGCTACGTTTCCTCGCTTCACCACAATGGCCAAATAGCCCTCATCGACTCTGCCACT

Fln Alignment:

AllPine_a_rep_c83625___DPQIDPRSGYCSSNQTYYSKRKPVNFPQDEY-LDLPSYVSSLHHN-GQIALID
B8LP93________________DFQVDQQSGFCKANGIYYSKREPVLLPPPHHPLDVITYIFSLQHNMQQIAFID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain