SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130743

Length: 150 nt

UniGene Fasta

>sp_v3.0_unigene130743
CGTCGTGACCTTGGCTGTCACTCAAATTTGGAGAGGTTCCCCAGCCTTGACAGTGGGGATCTGACGATAGAAGAGATTTTGGACCTCGTTGATTCACCAGATATGGCAGACCCAGGCAAAAGTCCTGATAATATTGGAGAAAGCAAAGTT

Ace file of the UniGene sp_v3.0_unigene130743

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor viviparous 1 n=1 Tax=Picea abies RepID=Q9FVK1_PICAB	-	-	3.0e-15	97%
FL-Next	tr=Transcription factor viviparous 1; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	97%
Sma3	Transcription factor viviparous 1	-	-	4.873e-06	-

Source	Gene names
Sma3	VP1/ABI3; vp1;

Source	GOs	Term	Type	e value	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	B3 DNA binding domain	IPR003340	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FVK1

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 50 - 828

Fln protein: RRDLGCHSNLERFPSLDSGDLTIEEILDLVDSPDMADPGKSPDNIGESKV

Protein Length: 51

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTGGAGAGGTTCCCCAGCCTTGACAGTGGGGATCTGACGATAGAAGAGATTTTGGACCTCGTTGATTCACCAGATATGGCAGACCCAGGCAAAAGTCCTGATAATATTGGAGAAAGCAAAGTT

Fln Alignment:

AllPine_a_rep_c83385___NLERFPSLDSGDLTIEEILDLVDSPDMADPGKSPDNIGESK
Q9FVK1________________NLERFPSLDSGDLTIEEILDLVESPDMADPGKSPDNIGESK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain