SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130733

Length: 454 nt

UniGene Fasta

>sp_v3.0_unigene130733
ATATTTTATTGGACGAGAAACTGAATCCTAAGATAGCAGATTTCGACATTTCAAAACTTTTCCCTGAAGATAAGACTCACGTCACCACACTGGAGCTCAAAGGAACTCACGGGTATGTAGCACCGGAGTATGTTATGTCATGGCAATCATCTCCAAAAGCCGATGTCTATAGCTTTGGTGTTGTTCTCCTGGAACTTGTCACCGGGAAAAATAAATTATTTCTAGACAAGATACTTTTGAGAGGGGTAAGATATTCTGACATTGTTCTGATTGTATTGAGATATCTTCGTTTTAGACCATGTTATTTAGTTCATCTGTAAACCATTTAGCCAAGTAGACGATTCGGGTTTTCTTTTAACATGAATTCCTCATCTGTTGACTTCTATACTAATTTAACAAGAAACTAAATTACAGTCATCCTTATGGAGGCCATACTTTATGAAAATGCAGGTAT

Ace file of the UniGene sp_v3.0_unigene130733

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cysteine-rich receptor-like protein kinase 3 [Arabidopsis thaliana] sp\|Q9CAL2.1\|CRK3_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 3; Short=Cysteine-rich RLK3; Flags: Precursor gb\|AAG52470.1\|AC010796_9 putative protein kinase; 41292-38663	-	-	4.0e-16	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Receptor serine-threonine protein kinase, putative	-	-	1.147e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	2.472e-09	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	7.558e-08	-

Source	Gene names
Sma3	AT1G53420; AT3G14840; AT5G49760; At1g70530; At4g04490; At4g21400; At4g21410; At5g49760; At5g49760/K2I5_13; CRK29; CRK3; CRK36; F24J13.10; F5A18.8; GSVIVT00000078001; GSVIVT00002759001; GSVIVT00002887001; GSVIVT00005812001; GSVIVT00010906001; GSVIVT0001137

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	EGF-like calcium-binding	IPR001881	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Patatin/Phospholipase A2-related	IPR002641	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013091	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G70530.1	CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 chr1:26588750-26591379 REVERSE LENGTH=646	6.0e-20	56%
RefSeq	Arabidopsis thaliana	NP_177210.1	cysteine-rich receptor-like protein kinase 3 [Arabidopsis thaliana]	8.0e-20	56%
RefSeq	Populus trichocarpa	XP_002314608.1	predicted protein, partial [Populus trichocarpa]	9.0e-22	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQB9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 51 aas, your sequence is shorter than subject: 106 - 290

Fln protein: ILLDEKLNPKIADFDISKLFPEDKTHVTTLELKGTHGYVAPEYVMSWQSSPKADVYSFGVVLLELVTGKNKLFLDKILLRGVRYSDIVLIVLRYLRFRPCYLVHL*

Protein Length: 107

Fln nts: ATATTTTATTGGACGAGAAACTGAATCCTAAGATAGCAGATTTCGACATTTCAAAACTTTTCCCTGAAGATAAGACTCACGTCACCACACTGGAGCTCAAAGGAACTCACGGGTATGTAGCACCGGAGTATGTTATGTCATGGCAATCATCTCCAAAAGCCGATGTCTATAGCTTTGGTGTTGTTCTCCTGGAACTTGTCACCGGGAAAAATAAATTATTTCTAGACAAGATACTTTTGAGAGGGGTAAGATATTCTGACATTGTTCTGATTGTATTGAGATATCTTCGTTTTAGACCATGTTATTTAGTTCATCTGTAAACCATTTAGCCAAGTAGACGATTCGGGTTTTCTTTTAACATGAATTCCTCATCTGTTGACTTCTATACTAATTTAACAAGAAACTAAATTACAGTCATCCTTATGGAGGCCATACTTTATGAAAATGCAGGTAT

Fln Alignment:

AllPine_a_rep_c83369___ILLDEKLNPKIADFDISKLFPEDKTHVTTLELKGTHGYVAPEYVMSWQSSPKADVYSFGVVLLELVTGK
A9NQB9________________ILLDDKLNPKIADFGLARLFPDDETHVHT-RVAGTYGYMAPEYAMLGQLSVKADVYSFGVVLLEIVSGR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain