SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130720

Length: 361 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene130720
AATGTCCCAGTAAAGTATACACACCTTCTTATCGATGGAAAATTTGTTAATGCAGCTTCTGGAAAAACATTTCCAAGATTGGATCCCAGAAAAGGAGATTTGATTGTCAATGTGGCTGAAGGTGATGCAGAAAACGTGGACAAGGTTGTAAGGGCTGCGCGAAAAGCCTTTGACGAGGGCCCATTGCCGAAAATGACTGCTTATGAGAGGTCGTGTATTATTCTCCGGTTCGCTGACTTGCTTGAAAAGCATAATGATGAGATTGCAGCCTTGGAAACACGGGACAATGGGAAGCCTTATGAGCAAGCAGCCTTGGTTGAAGTGCCAATAGCAGACAGCTATTTCGTTACTATGCAGGGTA

Ace file of the UniGene sp_v3.0_unigene130720 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aldehyde dehydrogenase ALDH2b n=4 Tax=Poaceae RepID=Q9FRX7_ORYSJ	-	-	1.99993e-41	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Aldehyde dehydrogenase	-	-	8.1e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	1.566e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010		1.566e-11	%
Sma3	Pentose and glucuronate interconversions	00040		1.566e-11	%
Sma3	Ascorbate and aldarate metabolism	00053		1.566e-11	%
Sma3	Fatty acid metabolism	00071		1.566e-11	%
Sma3	Valine, leucine and isoleucine degradation	00280		1.566e-11	%
Sma3	Lysine degradation	00310		1.566e-11	%
Sma3	Arginine and proline metabolism	00330		1.566e-11	%
Sma3	Histidine metabolism	00340		1.566e-11	%
Sma3	Tryptophan metabolism	00380		1.566e-11	%
Sma3	beta-Alanine metabolism	00410		1.566e-11	%
Sma3	Glycerolipid metabolism	00561		1.566e-11	%
Sma3	Pyruvate metabolism	00620		1.566e-11	%
Sma3	Chloroalkane and chloroalkene degradation	00625		1.566e-11	%
Sma3	Propanoate metabolism	00640		1.566e-11	%
Sma3	Limonene and pinene degradation	00903		1.566e-11	%
Sma3	Metabolic pathways	01100		1.566e-11	%
Sma3	Biosynthesis of secondary metabolites	01110		1.566e-11	%
Sma3	Retinal dehydrogenase.	EC:1.2.1.36	-	4.177e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Retinol metabolism	00830		4.177e-07	%
Sma3	Metabolic pathways	01100		4.177e-07	%

Source	Gene names
Sma3	ALDH1a; ALDH2; ALDH2A; ALDH2B; ALDH2B4; ALDH2B7; ALDH2a; ALDH2b; ALDH3; Aldh; Aldh 2A; Aldh1; Aldh2a; Aldh2b; At1g23800; At3g48000; CHLREDRAFT_135609; F5O8.33; F5O8.35; GSVIVT00016121001; GSVIVT00020768001; GSVIVT00028844001; GSVIVT00030692001; OSJNBa0072

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	aldehyde dehydrogenase (NAD) activity	GO:0004029	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Seven-in-absentia protein, sina	IPR004162	-	-
Sma3	Zinc finger, SIAH-type	IPR013010	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Seven In Absentia Homolog-type	IPR013323	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Seven-in-absentia protein, TRAF-like domain	IPR018121	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G23800.1	ALDH2B7, ALDH2B aldehyde dehydrogenase 2B7 chr1:8412238-8414804 REVERSE LENGTH=534	70%
RefSeq	Arabidopsis thaliana	NP_564204.1	aldehyde dehydrogenase 2B7 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002301540.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUF6

Fln msg: Distance to subject end: 367 aas, your sequence is shorter than subject: 120 - 544

Fln protein: NVPVKYTHLLIDGKFVNAASGKTFPRLDPRKGDLIVNVAEGDAENVDKVVRAARKAFDEGPLPKMTAYERSCIILRFADLLEKHNDEIAALETRDNGKPYEQAALVEVPIADSYFVTMQG

Protein Length: 121

Fln nts: AATGTCCCAGTAAAGTATACACACCTTCTTATCGATGGAAAATTTGTTAATGCAGCTTCTGGAAAAACATTTCCAAGATTGGATCCCAGAAAAGGAGATTTGATTGTCAATGTGGCTGAAGGTGATGCAGAAAACGTGGACAAGGTTGTAAGGGCTGCGCGAAAAGCCTTTGACGAGGGCCCATTGCCGAAAATGACTGCTTATGAGAGGTCGTGTATTATTCTCCGGTTCGCTGACTTGCTTGAAAAGCATAATGATGAGATTGCAGCCTTGGAAACACGGGACAATGGGAAGCCTTATGAGCAAGCAGCCTTGGTTGAAGTGCCAATAGCAGACAGCTATTTCGTTACTATGCAGGGTA

Fln Alignment:

AllPine_a_rep_c83344___VPVKYTHLLIDGKFVNAASGKTFPRLDPRKGDLIVNVAEGDAENVDKVVRAARKAFDEGPLPKMTAYERSCIILRFADLLEKHNDEIAALETRDNGKPYEQAALVEVPIADSYF
A9NUF6________________VQVKHTQLLIDGQFVNAASGKTFPTFDPRTGDVIANVAEGDAPDVNRAVKAARKAFDVGPWPKMTAYERSCIMLRFADLLEKHNDEIAALETWDNGKPYEQASLVEVPMAVRLF

SNPs (tot: 5)

Position	A %	C %	T %	Probability
142	66	33		0.997452
154		66	33	0.997452
179	66	33		0.997452
187		66	33	0.997452
205		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain