SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130642

Length: 303 nt

UniGene Fasta

>sp_v3.0_unigene130642
CGCGGGATCGTTAGATCCCAGAAAAGTTAAAGGAAAAATTGTTGCCTGCCTTCGTGGTCTCAATGACAGACTTGAGAAAGGTTTAATCGTTCGATTAGCAGGAGGAGTAGGCCTGATTCTCGCCAATGCACCCAATGCACCCACTGGCGAGAGAACCGTTAACGCAGACCTTCATTTCTTCCTGCTGCACATTTGAATGCAACTGATTGAGCGGCAGTTTTTCAATACATCAAATCAACAGCGTCCCCTGTGGCTTCCATTTATTCAAGAACTCAATTAGATGTAAAGCCAGCTCCGACTATG

Ace file of the UniGene sp_v3.0_unigene130642

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Subtilisin-like protease n=1 Tax=Glycine max RepID=Q6WNU4_SOYBN	-	-	3.0e-17	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Chromosome undetermined scaffold_186, whole genome shotgun sequence	-	-	2.385e-06	-

Source	Gene names
Sma3	A1751; GSVIVT00007214001; GSVIVT00007221001; GSVIVT00011830001; GSVIVT00016430001; GSVIVT00034009001; GSVIVT00036104001; PHYPADRAFT_60122; POPTRDRAFT_556628; POPTRDRAFT_802668; RCOM_0267360; VITISV_001491; VITISV_036029;

Source	GOs	Term	Type	Identity
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G04160.1	AIR3 Subtilisin-like serine endopeptidase family protein chr2:1401450-1407694 REVERSE LENGTH=772	6.0e-16	63%
RefSeq	Arabidopsis thaliana	NP_565309.2	Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana]	8.0e-16	63%
RefSeq	Populus trichocarpa	XP_002330593.1	predicted protein [Populus trichocarpa]	1.0e-17	54%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE86

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 282 aas, atg_distance in limit (1-15): atg_distance = 15, W2: There is no M at the beginning, your sequence is shorter than subject: 65 - 394

Fln protein: AGSLDPRKVKGKIVACLRGLNDRLEKGLIVRLAGGVGLILANAPNAPTGERTVNADLHFFLLHI*

Protein Length: 66

Fln nts: CGCGGGATCGTTAGATCCCAGAAAAGTTAAAGGAAAAATTGTTGCCTGCCTTCGTGGTCTCAATGACAGACTTGAGAAAGGTTTAATCGTTCGATTAGCAGGAGGAGTAGGCCTGATTCTCGCCAATGCACCCAATGCACCCACTGGCGAGAGAACCGTTAACGCAGACCTTCATTTCTTCCTGCTGCACATTTGAATGCAACTGATTGAGCGGCAGTTTTTCAATACATCAAATCAACAGCGTCCCCTGTGGCTTCCATTTATTCAAGAACTCAATTAGATGTAAAGCCAGCTCCGACTATG

Fln Alignment:

AllPine_a_c83183___GSLDPRKVKGKIVACLRGLNDRLEKGLIVRLAGGVGLILANAPNAPTGERTVNADLH
D5AE86________________GSLDPKLVKGKIVMCDRGNNPRIAKGAEVKHAGGVGMILANSDS--DGEGLV-ADAH

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
87		33		66	0.997452
100	66		33		0.997452
164		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain