SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130551

Length: 488 nt

UniGene Fasta

>sp_v3.0_unigene130551
CGAACCGGGTTCGGTTGAAGACATATTCCATGCGGAGCCTGGGATTCTTCCCAATACCAGAGGTGGGTATGATATTGAGGGAAGCTGGAGCACCCCTTATCCAGTTCCGGATGCTTCGTTACCATGGGAGAGAAGGGAAGAGAATGTACAAGAGAAAAATGTGGACAGGGAGAGAATGGTGAGGACGCCTACATTGGCCGAACTGACTATTCCTGAACCAGAACTCAATAGGCTCAGAGGCCGTGGAATACGCTTGAAGGAAAGAATCAAGTTGGGCAGTGCTGGTGTTACTCGTAGGATCGTGGACACTGTACATGAAAAATGGAAAACATCTGAGATAGTGAAATTCAAATGTGAAGGTTCATCGGCCATGAATATGAAAAGAACCCACGACTTTTTGGAGGTTAGTAATTTTAATTGCCATCGTCACAGCTCTATCAACTGTTTGGGAATAAATTCTTAGCTGTGCATAAGGTTCACTATCTTTC

Ace file of the UniGene sp_v3.0_unigene130551

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRM family member 3 [Zea mays] gb\|ABU96081.1\| CRM family member 3 [Zea mays]	-	-	1.0e-25	47%
FL-Next	sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	31%

Source	Gene names
Sma3	At3g01370; GSVIVT00016549001; GSVIVT00020129001; OJ1001_G09.2; OJ1506_A04.16; Os09g0363100; OsI_16687; OsJ_15500; POPTRDRAFT_1090119; RCOM_0909010; T13O15.1; VITISV_006146; VITISV_010525;

Source	GOs	Term	Type	e value	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	0.0	-
Sma3	RNA binding	GO:0003723	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA-binding, CRM domain	IPR001890	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G01370.1	ATCFM2, CFM2 CRM family member 2 chr3:139033-143477 FORWARD LENGTH=1011	6.0e-30	47%
RefSeq	Arabidopsis thaliana	NP_186786.2	CRM family member 2 [Arabidopsis thaliana]	8.0e-30	47%
RefSeq	Populus trichocarpa	XP_002315729.1	predicted protein [Populus trichocarpa]	3.0e-30	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LF10

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 421 aas, your sequence is shorter than subject: 154 - 720

Fln protein: EPGSVEDIFHAEPGILPNTRGGYDIEGSWSTPYPVPDASLPWERREENVQEKNVDRERMVRTPTLAELTIPEPELNRLRGRGIRLKERIKLGSAGVTRRIVDTVHEKWKTSEIVKFKCEGSSAMNMKRTHDFLEVSNFNCHRHSSINCLGINS*

Protein Length: 155

Fln nts: CGAACCGGGTTCGGTTGAAGACATATTCCATGCGGAGCCTGGGATTCTTCCCAATACCAGAGGTGGGTATGATATTGAGGGAAGCTGGAGCACCCCTTATCCAGTTCCGGATGCTTCGTTACCATGGGAGAGAAGGGAAGAGAATGTACAAGAGAAAAATGTGGACAGGGAGAGAATGGTGAGGACGCCTACATTGGCCGAACTGACTATTCCTGAACCAGAACTCAATAGGCTCAGAGGCCGTGGAATACGCTTGAAGGAAAGAATCAAGTTGGGCAGTGCTGGTGTTACTCGTAGGATCGTGGACACTGTACATGAAAAATGGAAAACATCTGAGATAGTGAAATTCAAATGTGAAGGTTCATCGGCCATGAATATGAAAAGAACCCACGACTTTTTGGAGGTTAGTAATTTTAATTGCCATCGTCACAGCTCTATCAACTGTTTGGGAATAAATTCTTAGCTGTGCATAAGGTTCACTATCTTTC

Fln Alignment:

AllPine_a_rep_c82993___LPWERREENVQEKNVDRERMVRTPTLAELTIPEPELNRLRGRGIRLKERIKLGSAGVTRRIVDTVHEKWKTSEIVKFKCEGSSAMNMKRTHDFLEV
Q9LF10________________MPWEREEERFILRRMKKESV---PTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNKIKSMWKLNELAMVRFDVPLCRNMERAQEIIEM

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
123		66		33	0.997452
124		66	33		0.997452
125	66		33		0.997452
126			33	66	0.997452
223			66	33	0.997458
224	66			33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain