SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130531

Length: 230 nt

UniGene Fasta

>sp_v3.0_unigene130531
CGTCGTGACCTTGGCTGTCACTCAAAATCACTACTGGAAAATGGCAGGTGTGCGTTGGCTGCATTAGTTATACTCGAGATGCTGGAAGCATGATTAAATACCATAAGAATCTGACCACCAAAGGATATCGTTCACTGATCTTCAGCGGTGACCATGACATGTGTGTGCCTTTCACTGGAAGTGAAGCATGGACAAGATCAATGGGATACGAAATAATTGATGAATGGCGT

Ace file of the UniGene sp_v3.0_unigene130531

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine carboxypeptidase-like 21 [Arabidopsis thaliana] gb\|AEE77009.1\| serine carboxypeptidase-like 21 [Arabidopsis thaliana]	-	-	1.0e-24	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Serine carboxypeptidase, putative	-	-	2.024e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Carboxypeptidase C.	EC:3.4.16.5	-	1.986e-22	-

Source	Gene names
Sma3	At2g22960; At3g25420; At4g12910; CBP1; CHLREDRAFT_123507; CXP; F21P24.2; F25G13.7; GSVIVT00010407001; GSVIVT00010611001; GSVIVT00025059001; GSVIVT00025061001; LOC_Os12g15470; MWL2.3; OSIGBa0097I24.1; OSJNBb0062H02.3; Os04g0321700; Os12g0257000; OsI_15357;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G25420.1	scpl21 serine carboxypeptidase-like 21 chr3:9217832-9220836 FORWARD LENGTH=505	2.0e-31	61%
RefSeq	Arabidopsis thaliana	NP_189169.1	serine carboxypeptidase-like 21 [Arabidopsis thaliana]	3.0e-31	61%
RefSeq	Populus trichocarpa	XP_002321240.1	predicted protein [Populus trichocarpa]	8.0e-32	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ79

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 52 aas, your sequence is shorter than subject: 76 - 494

Fln protein: S*PWLSLKITTGKWQVCVGCISYTRDAGSMIKYHKNLTTKGYRSLIFSGDHDMCVPFTGSEAWTRSMGYEIIDEWR

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATCACTACTGGAAAATGGCAGGTGTGCGTTGGCTGCATTAGTTATACTCGAGATGCTGGAAGCATGATTAAATACCATAAGAATCTGACCACCAAAGGATATCGTTCACTGATCTTCAGCGGTGACCATGACATGTGTGTGCCTTTCACTGGAAGTGAAGCATGGACAAGATCAATGGGATACGAAATAATTGATGAATGGCGT

Fln Alignment:

AllPine_a_rep_c82954___TGKWQVCVGCISYTRDAGSMIKYHKNLTTKGYRSLIFSGDHDMCVPFTGSEAWTRSMGYEIIDEWR
B8LQ79________________SGRWQVCADRITYTRDAGSMIKYHRNLTTKGYRSLIFSGDHDMCVPYTGSEAWTRSMGYKITDEWR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain