SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130416

Length: 568 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene130416
ACGTACTTCTCACTGCCGATCAGGGTATAGGCAGATACTACATGGCTGCTCGTGCATATTCCAGTGGGCAAGGAGTTCCCTTCGATAACACGACTACCACGGCCATTTTAGAATACGAGGGAGGCTCTACCACATCGACTCCAGTCATGCCTAATCTTCCATTTTATAACGACACGCAGACTGTGACCAGCTTCGCTGATCGCCTCAGAAGCTTGGCCTCACAAGACCATCCAACCTTCGTTCCTCAGACCGTGGATGAAAATTTGTTCTACACTGTCGGTCTAGGATTGATCAACTGTCCAGGACAGTCTTGTGGAGGTCCCAATGGATCAAGATTTGCAGCAAGTATGAATAACATATCATTTGTGTTGCCAACGTCATTTTCAATCCTTCAAGCTCAACAACTTGGAAAGAAAGGAGTATTCACGACGGACTTCCCCGATAACCCTCCCGTGCAATTTGATTATACTGCTCAGAACATAAGCAGAGCCCTCTGGTCCCCACTGAAAGACACCAGAGCGAAAGTCCTTATGTATAACACAACGGTGCAAGTAATTCTTCAGGGAAC

Ace file of the UniGene sp_v3.0_unigene130416 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA	-	-	0.0	80%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	0.0	81%
Sma3	Laccase	-	-	2.241e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	0.0	-
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	1.705e-29	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		1.705e-29	%
Sma3	Metabolic pathways	01100		1.705e-29	%

Source	Gene names
Sma3	At2g29130; At2g30210; At2g40370; At3g09220; At5g05390; At5g07130; At5g09360; At5g48100; B1088C09.5; F3L24.9; GLac90; GSVIVT00001780001; GSVIVT00001781001; GSVIVT00006367001; GSVIVT00006372001; GSVIVT00006373001; GSVIVT00006374001; GSVIVT00006383001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Bacterial extracellular solute-binding family 1, conserved site	IPR006061	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05390.1	LAC12 laccase 12 chr5:1594753-1597042 FORWARD LENGTH=565	60%
RefSeq	Arabidopsis thaliana	NP_196158.1	laccase 12 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002315131.1	laccase 90c [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9AUI5

Fln msg: Distance to subject end: 107 aas, your sequence is shorter than subject: 188 - 576

Fln protein: VLLTADQGIGRYYMAARAYSSGQGVPFDNTTTTAILEYEGGSTTSTPVMPNLPFYNDTQTVTSFADRLRSLASQDHPTFVPQTVDENLFYTVGLGLINCPGQSCGGPNGSRFAASMNNISFVLPTSFSILQAQQLGKKGVFTTDFPDNPPVQFDYTAQNISRALWSPLKDTRAKVLMYNTTVQVILQG

Protein Length: 189

Fln nts: ACGTACTTCTCACTGCCGATCAGGGTATAGGCAGATACTACATGGCTGCTCGTGCATATTCCAGTGGGCAAGGAGTTCCCTTCGATAACACGACTACCACGGCCATTTTAGAATACGAGGGAGGCTCTACCACATCGACTCCAGTCATGCCTAATCTTCCATTTTATAACGACACGCAGACTGTGACCAGCTTCGCTGATCGCCTCAGAAGCTTGGCCTCACAAGACCATCCAACCTTCGTTCCTCAGACCGTGGATGAAAATTTGTTCTACACTGTCGGTCTAGGATTGATCAACTGTCCAGGACAGTCTTGTGGAGGTCCCAATGGATCAAGATTTGCAGCAAGTATGAATAACATATCATTTGTGTTGCCAACGTCATTTTCAATCCTTCAAGCTCAACAACTTGGAAAGAAAGGAGTATTCACGACGGACTTCCCCGATAACCCTCCCGTGCAATTTGATTATACTGCTCAGAACATAAGCAGAGCCCTCTGGTCCCCACTGAAAGACACCAGAGCGAAAGTCCTTATGTATAACACAACGGTGCAAGTAATTCTTCAGGGAAC

Fln Alignment:

AllPine_a_rep_c82669___VLLTADQGIGRYYMAARAYSSGQGVPFDNTTTTAILEYEGGSTTSTPVMPNLPFYNDTQTVTSFADRLRSLASQDHPTFVPQTVDENLFYTVGLGLINCPGQSCGGPNGSRFAASMNNISFVLPTSFSILQAQQLGKKGVFTTDFPDNPPVQFDYTAQNISRALWSPLKDTRAKVLMYNTTVQVILQG
Q9AUI5________________ILLTANQATGRYYMAARAYSSGQGVPFDNTTTTAILEYEGSSKTSTPVMPNLPFYNDTNSATSFANGLRSLGSHDHPVFVPQSVEENLFYTIGLGLIKCPGQSCGGPNGSRFAASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRDLWSPVKATRVKVLKYNSTVQLILQG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
222	66		33		0.997476
228		33		66	0.997457
237			33	66	0.997454
270	66		33		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain