SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130363

Length: 297 nt

UniGene Fasta

>sp_v3.0_unigene130363
TGCCACTGGATGTACATTTGATGATTGTTGAACCGGAACAACGTGTACCAGATTTTATCAAGGCTGGTGCAGACATTGTTAGTGTCCACTGTGAGCAATCTTCCACTATCCATTTGCACCGAACAGTAAATCAGATCAAGTCTCTTGGAGCGAAAGCTGGAGTGGTATTGAACCCAGCAACTCCTTTAAGTTGTATAGAATATGTTCTTGATGGTTATTGAAGCTGGGGCCAATGCGCTGGTGGCGGGATCTGCAGTATTTGGAGCAAAAGATTATGCTGAAGCTATTAAGGGCATC

Ace file of the UniGene sp_v3.0_unigene130363

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Ribulose-phosphate 3-epimerase, chloroplastic; AltName: Full=Pentose-5-phosphate 3-epimerase; Short=PPE; AltName: Full=R5P3E; Short=RPE; Flags: Precursor emb\|CAA90426.1\| pentose-5-phosphate-3-epimerase [Solanum tuberosum]	-	-	7.0e-31	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	Pentose-5-phosphate 3-epimerase	-	-	2.675e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ribulose-phosphate 3-epimerase.	EC:5.1.3.1	-	4.676e-21	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose phosphate pathway	00030	4.676e-21	%
Sma3	Pentose and glucuronate interconversions	00040	4.676e-21	%
Sma3	Carbon fixation in photosynthetic organisms	00710	4.676e-21	%
Sma3	Metabolic pathways	01100	4.676e-21	%
Sma3	Biosynthesis of secondary metabolites	01110	4.676e-21	%

Source	Gene names
Sma3	AT5G61410; At5g61410; CHLREDRAFT_135614; GSVIVT00016307001; LOC_Os03g07300; MICPUCDRAFT_47473; MICPUN_104768; OSTLU_32100; Os03g0169100; OsI_10180; OsJ_09567; Ot06g01840; PHYPADRAFT_111326; PHYPADRAFT_122169; PHYPADRAFT_207297; POPTRDRAFT_744163; RCOM_147

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ribulose-phosphate 3-epimerase activity	GO:0004750	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	tRNA wobble uridine modification	GO:0002098	Biological Process	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	pentose-phosphate shunt	GO:0006098	Biological Process	-
Sma3	reductive pentose-phosphate cycle	GO:0019253	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribulose-phosphate 3-epimerase	IPR000056	-	-
Sma3	Glucose-inhibited division protein A-related	IPR002218	-	-
Sma3	Glucose-inhibited division protein A	IPR004416	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G61410.1	RPE, EMB2728 D-ribulose-5-phosphate-3-epimerase chr5:24684085-24685836 REVERSE LENGTH=281	3.0e-40	95%
RefSeq	Arabidopsis thaliana	NP_200949.1	D-ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana]	5.0e-40	95%
RefSeq	Populus trichocarpa	XP_002330128.1	predicted protein [Populus trichocarpa]	5.0e-39	92%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP17

Fln msg: Separated hits, possible frame ERROR between 212 and 214, STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 99 - 292

Fln protein: PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLSCIEYVLxxVIEAGANALVAGSAVFGAKDYAEAIKGI

Protein Length: 100

Fln nts: TGCCACTGGATGTACATTTGATGATTGTTGAACCGGAACAACGTGTACCAGATTTTATCAAGGCTGGTGCAGACATTGTTAGTGTCCACTGTGAGCAATCTTCCACTATCCATTTGCACCGAACAGTAAATCAGATCAAGTCTCTTGGAGCGAAAGCTGGAGTGGTATTGAACCCAGCAACTCCTTTAAGTTGTATAGAATATGTTCTTGAxxxGGTTATTGAAGCTGGGGCCAATGCGCTGGTGGCGGGATCTGCAGTATTTGGAGCAAAAGATTATGCTGAAGCTATTAAGGGCATC

Fln Alignment:

AllPine_a_rep_c82520___PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLSCIEYVLDxVIEAGANALVAGSAVFGAKDYAEAIKGI
A9NP17________________PLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLSCIEYVLDxVIEAGANALVAGSAVFGAKDYAEAIKGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain