SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130268

Length: 420 nt

UniGene Fasta

>sp_v3.0_unigene130268
CGTCGTGACCTTGGCTGTCACTCAATCAGACTTCATTTCAAACACGCATCTACGGATCGTCGTGACCTTGGCAGTCCCTATCTTCGAACGCTCGCAATTCACTTTGTGAAGATTCGCTGATCAATTTATAACTATCGACTTATATACCGTCTCGAAACTCTATCCAATTCACAAGACCCCGTCTCATCTCTTTGCAGCAGGCATCATCCTCACGATTGAGCTCATATATTATCATTCATGGCATCCTTTGCTCAGGAAAACCCCGCAACCAGTGTTACCTCTTCTAGACTGAAGCTGTACTCTTACTGGCGCAGTTCATGTTCTTGGCGAGTCAGGATTGCTCTCAATCTGAAAGGGTTACCATATGAGTACAAAGCAGTGAATATTGTGCAAGGAGAGCAATTTAGTGAAGAGTTTACC

Ace file of the UniGene sp_v3.0_unigene130268

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutathione S-transferase zeta class n=1 Tax=Pinus brutia RepID=D2XZY3_9CONI	-	-	6.0e-22	81%
FL-Next	tr=Glutathione S-transferases zeta 2; Pinus brutia.	-	-	0.0	96%
Sma3	Glutathione S-transferase zeta class	-	-	1.662e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutathione transferase.	EC:2.5.1.18	-	1.687e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		1.687e-13	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		1.687e-13	%
Sma3	Drug metabolism - cytochrome P450	00982		1.687e-13	%
Sma3	Maleylacetoacetate isomerase.	EC:5.2.1.2	-	1.662e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Tyrosine metabolism	00350	1.662e-08	%
Sma3	Styrene degradation	00643	1.662e-08	%
Sma3	Metabolic pathways	01100	1.662e-08	%

Source	Gene names
Sma3	At2g02390; GST; GST18; GSTZ; GSTZ-A; GSTZ-B; GSTZ-C; GSTZ1; GSTZ3; GSVIVT00026346001; GSVIVT00035381001; GSVIVT00035382001; LOC_Os11g14040; OJ1712_E04.21; Os02g0564000; OsI_07693; OsI_35674; OsJ_07166; OsJ_33511; P0020C11.10; POPTRDRAFT_742621; POPTRDRAFT

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	glutathione transferase activity	GO:0004364	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	aromatic amino acid family metabolic process	GO:0009072	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Maleylacetoacetate isomerase	IPR005955	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G02380.1	ATGSTZ2, GSTZ2 glutathione S-transferase (class zeta) 2 chr2:626878-628569 FORWARD LENGTH=223	6.0e-14	60%
RefSeq	Arabidopsis thaliana	NP_849926.2	glutathione S-transferase zeta-class 1 [Arabidopsis thaliana]	2.0e-14	68%
RefSeq	Populus trichocarpa	XP_002328824.1	predicted protein [Populus trichocarpa]	5.0e-16	73%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: H6UZH1

Fln msg: Distance to subject end: 165 aas, your sequence is shorter than subject: 61 - 226

Fln protein: MASFAQENPATSVTSSRLKLYSYWRSSCSWRVRIALNLKGLPYEYKAVNIVQGEQFSEEFT

Protein Length: 62

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCAGACTTCATTTCAAACACGCATCTACGGATCGTCGTGACCTTGGCAGTCCCTATCTTCGAACGCTCGCAATTCACTTTGTGAAGATTCGCTGATCAATTTATAACTATCGACTTATATACCGTCTCGAAACTCTATCCAATTCACAAGACCCCGTCTCATCTCTTTGCAGCAGGCATCATCCTCACGATTGAGCTCATATATTATCATTC_-_ATGGCATCCTTTGCTCAGGAAAACCCCGCAACCAGTGTTACCTCTTCTAGACTGAAGCTGTACTCTTACTGGCGCAGTTCATGTTCTTGGCGAGTCAGGATTGCTCTCAATCTGAAAGGGTTACCATATGAGTACAAAGCAGTGAATATTGTGCAAGGAGAGCAATTTAGTGAAGAGTTTACC

Fln Alignment:

AllPine_a_rep_c82280___MASFAQENPATSVTSSRLKLYSYWRSSCSWRVRIALNLKGLPYEYKAVNIVQGEQFSEEFT
H6UZH1________________MASVSQENPATSVTSSRLKLYSYWRSSCSWRVRIALNLKGLPYEYKAVNIVQGEQFSEEFT

SNPs (tot: 3)

Position	C %	G %	T %	Probability
67	66	33		0.997455
68		33	66	0.997455
69		33	66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain