SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130131

Length: 442 nt

UniGene Fasta

>sp_v3.0_unigene130131
CGTCGTGACCTTGGCTGTCACTTGGAATGTGAGTGAAGGAAGAGCTTCCTTTGAGTCGCTACATTGTTGGTTGGCATCTCCAGCATCAGAGGCCAGCATTGTGGTTGTTGGGTTGCAAGAAATGGAAATGGGTGCCGGTGTTCTTGCTATGGCAGCTGCAAAAGAACTGTGATTTTCCTAACTCATTACCTTTTATATGGAGATATTTTGACATTTATGGCTTGTTGAAAAGTAAACGCAGATGTGTACCTCCCGTCATAATGGAGTTTCACAGGAAAGTAATAAATATCAAATAAACAAAAAATGCATATCATACTGAAGCTTCAATCTCATTATTGTGAAGGTTGTATGATGCATATAACAGGATTTGCATGAACATAGAGTATTAGGACTGCAAGGCTATTATACAGATTATAGTTGCCAATGAATGGTAAGACTCAAG

Ace file of the UniGene sp_v3.0_unigene130131

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Type II inositol 5-phosphatase, putative n=1 Tax=Ricinus communis RepID=B9RM01_RICCO	-	-	6.0e-12	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Type II inositol 5-phosphatase, putative	-	-	5.451e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoinositide 5-phosphatase.	EC:3.1.3.36	-	1.594e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Inositol phosphate metabolism	00562		1.594e-12	%
Sma3	Metabolic pathways	01100		1.594e-12	%
Sma3	Phosphatidylinositol signaling system	04070		1.594e-12	%
Sma3	Inositol-polyphosphate 5-phosphatase.	EC:3.1.3.56	-	3.596e-07	-

Source	KEGGs	Term	e value	Identity
Sma3	Inositol phosphate metabolism	00562	3.596e-07	%
Sma3	Metabolic pathways	01100	3.596e-07	%
Sma3	Phosphatidylinositol signaling system	04070	3.596e-07	%

Source	Gene names
Sma3	5PTASE12; 5PTASE13; At1g05630; At1g65580; At2g43900; F3F20.8; F5I14.11; F6E13.3; FRA3; GSVIVT00004113001; GSVIVT00009340001; GSVIVT00034748001; IPP3; IPP6; OJ1186_G01.37; Os08g0524100; Os09g0500300; OsI_29954; OsI_31917; OsJ_27996; OsJ_33286; POPTRDRAFT_6

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	inositol or phosphatidylinositol phosphatase activity	GO:0004437	Molecular Function	-
Sma3	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	GO:0004439	Molecular Function	-
Sma3	inositol-polyphosphate 5-phosphatase activity	GO:0004445	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Inositol polyphosphate-related phosphatase	IPR000300	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G65580.1	FRA3 Endonuclease/exonuclease/phosphatase family protein chr1:24377598-24383940 REVERSE LENGTH=1101	1.0e-14	71%
RefSeq	Arabidopsis thaliana	NP_176736.2	Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3 [Arabidopsis thaliana]	1.0e-14	71%
RefSeq	Populus trichocarpa	XP_002315103.1	predicted protein [Populus trichocarpa]	3.0e-15	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADM7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 267 aas, your sequence is shorter than subject: 57 - 462

Fln protein: VVTLAVTWNVSEGRASFESLHCWLASPASEASIVVVGLQEMEMGAGVLAMAAAKEL*

Protein Length: 58

Fln nts: CGTCGTGACCTTGGCTGTCACTTGGAATGTGAGTGAAGGAAGAGCTTCCTTTGAGTCGCTACATTGTTGGTTGGCATCTCCAGCATCAGAGGCCAGCATTGTGGTTGTTGGGTTGCAAGAAATGGAAATGGGTGCCGGTGTTCTTGCTATGGCAGCTGCAAAAGAACTGTGATTTTCCTAACTCATTACCTTTTATATGGAGATATTTTGACATTTATGGCTTGTTGAAAAGTAAACGCAGATGTGTACCTCCCGTCATAATGGAGTTTCACAGGAAAGTAATAAATATCAAATAAACAAAAAATGCATATCATACTGAAGCTTCAATCTCATTATTGTGAAGGTTGTATGATGCATATAACAGGATTTGCATGAACATAGAGTATTAGGACTGCAAGGCTATTATACAGATTATAGTTGCCAATGAATGGTAAGACTCAAG

Fln Alignment:

AllPine_a_rep_c81973___LAVTWNVSEGRASFESLHCWLASPASEASIVVVGLQEMEMGAGVLAMAAAKE
D5ADM7________________LAGTWNVSQERALCDSLISWLASPASEACIVVIGLQEMEMGAGFLAMAAAKE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
41	75	25			0.996479
44	75	25			0.996479
46		75		25	0.996479
47			25	75	0.996479
48	25			75	0.996479
53			33	66	0.997452
56	66			33	0.997452
60	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain