SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130064

Length: 467 nt

UniGene Fasta

>sp_v3.0_unigene130064
ATAGCTATGGAATTCTGTTACTGGAAATGCTTACCAGAAAAAGACCAACTAGCGACATATTTGATGGAAACCTAAATTTGCACAATTGGGTGAAGTCCACATTCCAAAATAGATTGACGGAAGTGCTTGATAGTGTCCTTGTTAGTGAGCTGAATGGAGATGAGTTTGAAGAAAATAATGCATACAAATGCTTAATTTCTTTGCTGCAAGTTGGTCTGCTTTGTTCAAAATATTCACCAGAAGAAAGACCAACTATGAGAGATGTAGTGAGGATGTTGGAGAGTATTAGAGAGGATTTAATGGGAAATATTGTTCCTTCTAGGGGATTGAGACGAAGTATATCCAATTTGCTTAGCAGTACAAGTGCAACAAGCAATGATGCCCCTACATTGAATGAACAATCTTCCACATTTTAATTTATGAAGCTAATAGCAACAAAATATTTTCAATGTTGCTATTGTTTTTAC

Ace file of the UniGene sp_v3.0_unigene130064

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine Rich Repeat, putative [Oryza sativa Japonica Group] gb\|ABA95464.1\| Leucine Rich Repeat family protein [Oryza sativa Japonica Group]	-	-	3.0e-16	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0Z3

Fln msg: your sequence is shorter than subject: 138 - 209

Fln protein: SYGILLLEMLTRKRPTSDIFDGNLNLHNWVKSTFQNRLTEVLDSVLVSELNGDEFEENNAYKCLISLLQVGLLCSKYSPEERPTMRDVVRMLESIREDLMGNIVPSRGLRRSISNLLSSTSATSNDAPTLNEQSSTF*

Protein Length: 139

Fln nts: ATAGCTATGGAATTCTGTTACTGGAAATGCTTACCAGAAAAAGACCAACTAGCGACATATTTGATGGAAACCTAAATTTGCACAATTGGGTGAAGTCCACATTCCAAAATAGATTGACGGAAGTGCTTGATAGTGTCCTTGTTAGTGAGCTGAATGGAGATGAGTTTGAAGAAAATAATGCATACAAATGCTTAATTTCTTTGCTGCAAGTTGGTCTGCTTTGTTCAAAATATTCACCAGAAGAAAGACCAACTATGAGAGATGTAGTGAGGATGTTGGAGAGTATTAGAGAGGATTTAATGGGAAATATTGTTCCTTCTAGGGGATTGAGACGAAGTATATCCAATTTGCTTAGCAGTACAAGTGCAACAAGCAATGATGCCCCTACATTGAATGAACAATCTTCCACATTTTAA___TTTATGAAGCTAATAGCAACAAAATATTTTCAATGTTGCTATTGTTTTTAC

Fln Alignment:

AllPine_a_rep_c81818___SYGILLLEMLTRKRPTSDIFDGNLNLHNWVKSTFQNRLTEVLDSVLVSELNGDEFEENNAYKCLISLLQVGLLCSKYSPEERPTMRDVVRMLESIREDLMG
A9P0Z3________________SYGIVLLEMMTGKKPTHNMFVEGPSLQNWVGSNFPNRVGEVVDKSLLSRTSTSIEEEKN-LNCLSQLLSVGLLCTKESPEGRPTMIDIMGTLQSIKDTFLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain