SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130014

Length: 467 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene130014
TAGATATACAGTGGAGAATATCAATGGTAGACATTATGCAGAGAACTTGACAGAGTTCAAAGTCTGTGTTTTGATTGGGCTGCAAAATGGAAGCAATCAAACAGCACTCATTAATGGTATTTGTATTGGTGGGGTTCAGTTTTTGTATATCAGTTGAAGCAGGAATTACAAGCAGATATGTGCGTACGGTTAACGATAATGTGGATATGCCCATGGACAGTGGTGCTTTTTATGTCCCCCTGGTTACAATGCTCCCCAACAGGTTCATATCACTCAAGGAGATTATGAGGGTACAGCTGTTATTGTCTCTTGGATTACACCATCAGAGCCTGGAACCAGTATTGTGCTGTATGGCCCTGAGGAGTCCAAGTACGCATATGCAGCATATGGTATTATGACCAAGTATATGTATTATAATTATACATCTGGATTTATCATCATTGCACTCTGAGGGATCTAGAGACATT

Ace file of the UniGene sp_v3.0_unigene130014 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	purple acid phosphatase [Nicotiana tabacum]	-	-	3.0e-25	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Purple acid phosphatase	-	-	7.00649e-44	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acid phosphatase.	EC:3.1.3.2	-	2.8026e-45	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		2.8026e-45	%
Sma3	Riboflavin metabolism	00740		2.8026e-45	%

Source	Gene names
Sma3	ACPEPP; AP1; AT11; At2g16430; At5g34850; F16F14.7; GSVIVT00014522001; GSVIVT00014523001; GSVIVT00032768001; GSVIVT00035928001; GSVIVT00035929001; GSVIVT00035931001; LOC_Os12g44020; LOC_Os12g44050; Os01g0776600; Os06g0643900; Os12g0637100; Os12g0637400; Os

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	extracellular space	GO:0005615	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G34850.1	ATPAP26, PAP26 purple acid phosphatase 26 chr5:13108475-13111217 REVERSE LENGTH=475	7.0e-24	61%
RefSeq	Arabidopsis thaliana	NP_198334.1	purple acid phosphatase 26 [Arabidopsis thaliana]	9.0e-24	61%
RefSeq	Populus trichocarpa	XP_002307690.1	predicted protein [Populus trichocarpa]	2.0e-27	64%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVR5

Fln msg: Overlapping hits, possible frame ERROR between 239 and 227, Unexpected STOP codon at 3' end. Distance to subject end: 355 aas, atg_distance in limit (1-15): atg_distance = 8, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 122 - 517

Fln protein: MEAIKQHSLMVFVLVGFSFCISVEAGITSRYVRTVNDNVDMPMDSGxxxxxxGYNAPQQVHITQGDYEGTAVIVSWITPSEPGTSIVLYGPEESKYAYAAYGIMTKYMYYNYTSGFIIIAL*

Protein Length: 123

Fln nts: TAGATATACAGTGGAGAATATCAATGGTAGACATTATGCAGAGAACTTGACAGAGTTCAAAGTCTGTGTTTTGATTGGGCTGCAAA_-_ATGGAAGCAATCAAACAGCACTCATTAATGGTATTTGTATTGGTGGGGTTCAGTTTTTGTATATCAGTTGAAGCAGGAATTACAAGCAGATATGTGCGTACGGTTAACGATAATGTGGATATGCCCATGGACAGTGGTxxxxxxxxxxxxxxxxxxGGTTACAATGCTCCCCAACAGGTTCATATCACTCAAGGAGATTATGAGGGTACAGCTGTTATTGTCTCTTGGATTACACCATCAGAGCCTGGAACCAGTATTGTGCTGTATGGCCCTGAGGAGTCCAAGTACGCATATGCAGCATATGGTATTATGACCAAGTATATGTATTATAATTATACATCTGGATTTATCATCATTGCACTCTGAGGGATCTAGAGACATT

Fln Alignment:

AllPine_a_rep_c81698___FSFCISVEAGITSRYVRTVNDNVDMPMDSGAxxxxPGYNAPQQVHITQGDYEGTAVIVSWITPSEPGTSIVLYGPEESKYAYAAYGIMTKYMYYNYTSGFI
A9NVR5________________FSHPRNSNAGVTSSFMRSLMASVDMPLDNEAxxxxKGYNAPEQVHITQGDYEGKAVIVSWVTSAEPGSSEVFYDTVEHNYKYRAKGNITTYTFFNYTSGFI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
86	25	75			0.996473
92	75		25		0.996473
95		75		25	0.996473
108		75		25	0.996473
123	25	75			0.996473
150		25		75	0.996473
186	75		25		0.996473
231	33		33		0.997753

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain