SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129880

Length: 356 nt

UniGene Fasta

>sp_v3.0_unigene129880
TGTTATGATGAAGAAGAGGAAGGGAAGAGCATCAATATAGCTTCTGTGGTTGGTTTGACTGTTGCAAGGGAATATGCCACTAGAAATATCACAGCCAATGCCATAGCACCTGGATTTATTGCTTCAGACATGACTGCAAAACTTGGTGGTGACCTTGGTTGTACTTATTCTCCAGACCATACCTCTGGGTAGGTATGGACAACCGGAGGAAGTTGCAGGTTTGGTGGAGTTCTTGGCTCTTAATCCAGCTGCCAACTATATCACGGGCCAGGTTTTCAATATTGATGGAGGAATGGTTATGTAAAGACAAGCTAATTTCTAGTGTCTATGAGTTTGCTAAGTGCATGGATGCTGGC

Ace file of the UniGene sp_v3.0_unigene129880

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic; AltName: Full=3-ketoacyl-acyl carrier protein reductase; Flags: Precursor emb\|CAA45866.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Cuphea lanceolata] prf\|\|1814446A beta ketoacyl-A	-	-	2.0e-26	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	3-oxoacyl-reductase	-	-	1.505e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.1.1.10-	-	2.182e-19	-

Source	Gene names
Sma3	At1g24360; CHLREDRAFT_114298; CLKR27; F21J9.2; F3I6.30; GSVIVT00017895001; GSVIVT00035074001; LOC_Os12g13930; MICPUCDRAFT_55323; MICPUN_113389; OJ1003_F04.4; OJ1126_B06.25; OSJNBb0006N15.11; OSTLU_12103; Os02g0503500; Os04g0376300; Os12g0242700; OsI_07326

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity	GO:0004316	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	3-oxoacyl-(acyl-carrier-protein) reductase	IPR011284	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein chr1:8640820-8643283 FORWARD LENGTH=319	6.0e-23	78%
RefSeq	Arabidopsis thaliana	NP_564216.1	3-oxoacyl-[acyl-carrier-protein] reductase [Arabidopsis thaliana]	7.0e-23	78%
RefSeq	Populus trichocarpa	XP_002314551.1	predicted protein [Populus trichocarpa]	8.0e-30	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PR50

Fln msg: Overlapping hits, possible frame ERROR between 28 and 10, your sequence is shorter than subject: 95 - 328

Fln protein: VMxxxxxxxxINIASVVGLTVAREYATRNITANAIAPGFIASDMTAKLGGDLGCTYSPDHTSG*VWTTGGSCRFGGVLGS*SSCQLYHGPGFQY*

Protein Length: 96

Fln nts: TGTTATGxxxxxxxxxxxxxxxxxxxxxxxxATCAATATAGCTTCTGTGGTTGGTTTGACTGTTGCAAGGGAATATGCCACTAGAAATATCACAGCCAATGCCATAGCACCTGGATTTATTGCTTCAGACATGACTGCAAAACTTGGTGGTGACCTTGGTTGTACTTATTCTCCAGACCATACCTCTGGGTAGGTATGGACAACCGGAGGAAGTTGCAGGTTTGGTGGAGTTCTTGGCTCTTAATCCAGCTGCCAACTATATCACGGGCCAGGTTTTCAATATTGA___TGGAGGAATGGTTATGTAAAGACAAGCTAATTTCTAGTGTCTATGAGTTTGCTAAGTGCATGGATGCTGGC

Fln Alignment:

AllPine_a_rep_c81405___VMMxxxxxxSINIASVVGLT---------------------VAREYATRNITANAIAPGFIASDMTAKLGGDL
C0PR50________________VMMxxxxxxVINIASVVGLTGNIGQANYSAAKAGVIGLTKTVAREYASRNITANAIAPGFIASDMTAKLGDEI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
158	33	33			0.997753
160	33	33		33	0.997752
161	33	33		33	0.997752
164		33	33		0.997753
167	33	33		33	0.997752
168	33	33		33	0.997752
315		66		33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain