SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129847

Length: 333 nt

UniGene Fasta

>sp_v3.0_unigene129847
CGTCGTGACCTTGGCTGTCACTCAAAAATTGAGAGGAGAGGAAGGCATTTAAGAAGAAGGATTATTTAATGGCAGTAGATGCTTACACACAGGCCATTGATTTGGATCCCAATAATGCAATTTTTCTGTCAAATAGAAGTCTTTGCTGGATTAGATTGGGACAAGCTGAACAAGCATTAGCTGATGCAAAGGCTTGCAGAGCACTGCGCCCAGATTGGCCAAAAGCTTGTTACAGAGAAGGAGTGGCACTGCGCCTCTTCACTTTGATGAAGCTGCAAAATAGACATTCTATGAAGGAGTGGAGCTTGATCCTGAAATAAAGAACTTGTTGAT

Ace file of the UniGene sp_v3.0_unigene129847

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ankyrin repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SZ58_RICCO	-	-	1.0e-31	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Ankyrin-like protein	-	-	1.724e-10	-

Source	Gene names
Sma3	16A; 16B; At3g04710; B1047A05.26; F7O18.18; GSVIVT00007442001; LOC_Os03g42350; LOC_Os03g47670; LOC_Os12g43940; OJ1227_D07.20; OSJNBa0067E01.12; OSJNBb0111B07.15; Os02g0491900; Os02g0493100; Os02g0493300; Os02g0494000; Os03g0621400; Os03g47670; Os05g010360

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3		IPR013596	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04710.1	TPR10 ankyrin repeat family protein chr3:1278229-1280942 FORWARD LENGTH=456	4.0e-31	71%
RefSeq	Arabidopsis thaliana	NP_001030635.1	ankyrin repeat family protein [Arabidopsis thaliana]	5.0e-31	71%
RefSeq	Populus trichocarpa	XP_002319644.1	predicted protein, partial [Populus trichocarpa]	3.0e-31	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRK6

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 17 aas, your sequence is shorter than subject: 106 - 460

Fln protein: S*PWLSLKN*EERKAFKKKDYLMAVDAYTQAIDLDPNNAIFLSNRSLCWIRLGQAEQALADAKACRALRPDWPKACYREGVALRLFTLMKLQNRHSMKEWSLILK*

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAATTGAGAGGAGAGGAAGGCATTTAAGAAGAAGGATTATTTAATGGCAGTAGATGCTTACACACAGGCCATTGATTTGGATCCCAATAATGCAATTTTTCTGTCAAATAGAAGTCTTTGCTGGATTAGATTGGGACAAGCTGAACAAGCATTAGCTGATGCAAAGGCTTGCAGAGCACTGCGCCCAGATTGGCCAAAAGCTTGTTACAGAGAAGGAGTGGCACTGCGCCTCTTCACTTTGATGAAGCTGCAAAATAGACATTCTATGAAGGAGTGGAGCTTGATCCTGAAATAAAGAACTTGTTGAT

Fln Alignment:

AllPine_a_rep_c81337___KAFKKKDYLMAVDAYTQAIDLDPNNAIFLSNRSLCWIRLGQAEQALADAKACRALRPDWPKACYREGVALRL
C0PRK6________________EAFKKKDYLTAVDAYTQAIDLDPNNAILLSNRSLCWIRLGQAEQALADAKACRAMCPDWPKACYREGVALRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain