SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129720

Length: 181 nt

UniGene Fasta

>sp_v3.0_unigene129720
CGTCGTGACCTTGGCTGTCACTCAGGTATCTACAATTCTGGGAGTTGGTACAGGACTCAAGAACAACGATGTTCTCTTTTCGGGATATCCGGTAATTGGATATCAGAATAACATTCAAGCTGCTGGATCGTGTCTGAGCAGCCCAGAGGACGAACTGCGGACAGCGTGCGCATGGGATCCT

Ace file of the UniGene sp_v3.0_unigene129720

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	D-arabinono-1,4-lactone oxidase activity	GO:0003885	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	D-arabinono-1,4-lactone oxidase	IPR007173	-	-
Sma3	Plant-specific FAD-dependent oxidoreductase	IPR010030	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G46740.1	D-arabinono-1,4-lactone oxidase family protein chr2:19205182-19207455 REVERSE LENGTH=590	8.0e-14	52%
RefSeq	Arabidopsis thaliana	NP_182197.1	D-arabinono-1,4-lactone oxidase-like protein [Arabidopsis thaliana]	1.0e-13	52%
RefSeq	Populus trichocarpa	XP_002302669.1	predicted protein [Populus trichocarpa]	9.0e-16	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW10

Fln msg: Distance to subject end: 200 aas, your sequence is shorter than subject: 60 - 500

Fln protein: VVTLAVTQVSTILGVGTGLKNNDVLFSGYPVIGYQNNIQAAGSCLSSPEDELRTACAWDP

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTATCTACAATTCTGGGAGTTGGTACAGGACTCAAGAACAACGATGTTCTCTTTTCGGGATATCCGGTAATTGGATATCAGAATAACATTCAAGCTGCTGGATCGTGTCTGAGCAGCCCAGAGGACGAACTGCGGACAGCGTGCGCATGGGATCCT

Fln Alignment:

AllPine_a_rep_c81052___AVTQVSTILGVGTGLKNNDVLFSGYPVIGYQNNIQAAGSCLSSPEDELRTACAWDP
A9NW10________________SMAQVSIILTSGTGLQNNDVLYLGYPVIGYQNNMQAAGSCLSSPEDELRTACPWDP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
45		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain