SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129694

Length: 278 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene129694
ATGGGGGGTTGCCGGCCAAGGACTACAATGGATTGAGTGATCCTTATGTGAAATTACAGCTAGGGAAATCAAAAGCCCGGACAAGAGTGATAAGGAAGACTCTCAATCCCTCATGGAACGAGGAATTCACCTTCAAAGTTGATGATCTCAGCGAGGAATTGCATATTTCTTTGTGGGATGAGGATAAGTTCTTAGTTGATGATTTCCTAGGGCAGGTGAAGGTGCCTGTTTCCAAGGTGCTCGATTCTGAGAAACATACCATGCCGCTCACTTGGTTT

Ace file of the UniGene sp_v3.0_unigene129694 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C2 calcium/lipid-binding and GRAM domain containing protein [Arabidopsis thaliana] sp\|Q9ZVT9.4\|C2GR1_ARATH RecName: Full=C2 and GRAM domain-containing protein At1g03370 gb\|AAC72128.2\| Contains similarity to gb\|AB011110 KIAA0538 protein from Homo sapiens b	-	-	3.0e-25	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%

Source	Gene names
Sma3	At1g03370; F15K9.2; GSVIVT00004317001; GSVIVT00007982001; OSJNBa0055N24.36; Os06g0297800; Os08g0492400; OsI_22634; OsI_29710; OsJ_27768; P0686H11.15; PHYPADRAFT_127880; PHYPADRAFT_177866; PHYPADRAFT_197248; PHYPADRAFT_224326; POPTRDRAFT_560079; POPTRDRAFT

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	GRAM	IPR004182	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G03370.1	C2 calcium/lipid-binding and GRAM domain containing protein chr1:830968-834996 FORWARD LENGTH=1020	4.0e-31	56%
RefSeq	Arabidopsis thaliana	NP_171836.3	C2 calcium/lipid-binding and GRAM domain containing protein [Arabidopsis thaliana]	5.0e-31	56%
RefSeq	Populus trichocarpa	XP_002329933.1	predicted protein [Populus trichocarpa]	1.0e-31	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRR3

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 92 - 171

Fln protein: GGLPAKDYNGLSDPYVKLQLGKSKARTRVIRKTLNPSWNEEFTFKVDDLSEELHISLWDEDKFLVDDFLGQVKVPVSKVLDSEKHTMPLTWF

Protein Length: 93

Fln nts: ATGGGGGGTTGCCGGCCAAGGACTACAATGGATTGAGTGATCCTTATGTGAAATTACAGCTAGGGAAATCAAAAGCCCGGACAAGAGTGATAAGGAAGACTCTCAATCCCTCATGGAACGAGGAATTCACCTTCAAAGTTGATGATCTCAGCGAGGAATTGCATATTTCTTTGTGGGATGAGGATAAGTTCTTAGTTGATGATTTCCTAGGGCAGGTGAAGGTGCCTGTTTCCAAGGTGCTCGATTCTGAGAAACATACCATGCCGCTCACTTGGTTT

Fln Alignment:

AllPine_a_c80998___NGLSDPYVKLQLGKSKARTRVIRKTLNPSWNEEFTFKVDDLSEELHISLWDEDKFLVDDFLGQVKV
A9NRR3________________NTTSDPYVMVSLGKQTVKTRTVKRSLNPEWDDELTVGVPSPTVQLKVEVMDKDRFSKDEFLGGTKV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain