SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129440

Length: 471 nt

UniGene Fasta

>sp_v3.0_unigene129440
GGTAGTTCATTCGCCACCATTTGTTGGACGAAGAGGACGAACTGGATATTATGCATCTATATGACGCAGGAAATGAATGCATGTCCTCATCTCTATCCTTCTCGCCCGGCGGAGATTATCTCCGCGCCACTAGCAGCGGCTCATGCCAACGTCGGAGCTGGCTGTCGTCATCAGAAGAGAATGAGAATGAATATACACAACTACAACACTTTTCCTCTTCTTCTTCTGTACGCCCTGTTACGAGAGCAGAGGCGTTTAAGGTAAAGCCACAGGCACATGAGGAGCACAATGGAGAGATGAAGCAGATGAGCGCTCATCACTACAGAGGAGTCAGGCGGCGGCCGTGGGGTAAATTTGCAGCGGAAATTAGGGATCCTGCCAAGAAGGGGTCCAGAATTTGGTTAGGCACTTTCGACACCGCCGAAGAAGCCGCTCTCGCATATGACAGCGCTGCCTTCAGAATCCGCGGAG

Ace file of the UniGene sp_v3.0_unigene129440

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ERF/AP2 transcription factor n=1 Tax=Arabidopsis thaliana RepID=F4K831_ARATH	-	-	1.0e-15	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	AP2/ERF domain-containing transcription factor	-	-	3.408e-29	-

Source	Gene names
Sma3	24.t00032; 24.t00040; 25.t00062; ACRE1; Aa1_7580; Aa6_7580; At1g06160; At2g44840; At3g23230; At3g23240; At4g17490; At5g07580; At5g13330; At5g47220; At5g47230; At5g51190; At5g61590; At5g61600; B1234D02.6; Bd5g07580; CDBP; Cr_7580; DDTFR10/A; DORA; DRE; DRE

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	Biological Process	-
Sma3	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	-
Sma3	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3		GO:0045941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G07580.1	Integrase-type DNA-binding superfamily protein chr5:2399525-2400349 FORWARD LENGTH=274	2.0e-20	53%
RefSeq	Arabidopsis thaliana	NP_196375.2	ERF/AP2 transcription factor [Arabidopsis thaliana]	3.0e-20	53%
RefSeq	Populus trichocarpa	XP_002304300.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	3.0e-18	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMA3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 54 aas, your sequence is shorter than subject: 156 - 206

Fln protein: *FIRHHLLDEEDELDIMHLYDAGNECMSSSLSFSPGGDYLRATSSGSCQRRSWLSSSEENENEYTQLQHFSSSSSVRPVTRAEAFKVKPQAHEEHNGEMKQMSAHHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFDTAEEAALAYDSAAFRIRG

Protein Length: 157

Fln nts: GGTAGTTCATTCGCCACCATTTGTTGGACGAAGAGGACGAACTGGATATTATGCATCTATATGACGCAGGAAATGAATGCATGTCCTCATCTCTATCCTTCTCGCCCGGCGGAGATTATCTCCGCGCCACTAGCAGCGGCTCATGCCAACGTCGGAGCTGGCTGTCGTCATCAGAAGAGAATGAGAATGAATATACACAACTACAACACTTTTCCTCTTCTTCTTCTGTACGCCCTGTTACGAGAGCAGAGGCGTTTAAGGTAAAGCCACAGGCACATGAGGAGCACAATGGAGAGATGAAGCAGATGAGCGCTCATCACTACAGAGGAGTCAGGCGGCGGCCGTGGGGTAAATTTGCAGCGGAAATTAGGGATCCTGCCAAGAAGGGGTCCAGAATTTGGTTAGGCACTTTCGACACCGCCGAAGAAGCCGCTCTCGCATATGACAGCGCTGCCTTCAGAATCCGCGGAG

Fln Alignment:

AllPine_a_rep_c80398___IRHHLLDEEDELDIMHLYDAGNECMSSSLSFSPGGDYLRATSSGSCQRRSWLXXXXXXXXXYTQLQHFSSSSSVRPVTRAE-AFKVKPQAHEEHNGEMKQMS-AHHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFDTXXXXXXXXXXXXFRIRG
A9NMA3________________IRHHLLDVEDEIDIIDL-QRGNQVLASGS---------RLTSDGN---------------KFAEAQDYSSSSSVCPVIRREDAFNVKPQAHDEDNGENKQISRASHYRGVRRRPWGKFAAEIRDPAKKGARVWLGTFNTAEEAAHAYDRAAFRIRG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
196	66			33	0.997452
197			33	66	0.997452
198	66		33		0.997452
201	66		33		0.997452
202		66		33	0.997452
203	66	33			0.997452
310	66	33			0.997452
320	66		33		0.997452
323	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
216	227	TCT TCT TCT TCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain