SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129438

Length: 506 nt

UniGene Fasta

>sp_v3.0_unigene129438
GCATATCCTTGAATTGGAGCCCAGGATTCTGCGGCATATGTGTTGCTATCGAACATCTACAGTGCGGCTGGCCAGTGGGATGATAGAGCAAAGGTGAGAAAACTTATGAAGACAGGAGAGTGAAAAGGAGACAGGATATACGTGGATTGAAGTTAATGGTAAGGTACATACATTTGTTGCAAGAGACAGATCACACTCACATACAACGGAGATCTATTCAATGTTGGAGCAATTATATGGGCAAATGAAGGCGGCAGGGTATGTACCTGACACAAACTTCGTGCTCCATGACGTTGCAGAGGAGCAAAAGGAGTACTTTCTCTTTCACCACAGTGAGAAACTTGCCATTGCTTTTGGTATAATCAGCACACCCCCTAGAACACCTATCCAAATTGTCAAGAACCTCCGTGTTTGTGGAGACTGCCACAATGCCACTAAGTTCATCTCCAAGATACTTGAGAGGGAAATTGTAGTGAGGGATGCAAATCGCTTCCATCATTTCAGGG

Ace file of the UniGene sp_v3.0_unigene129438

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SMZ2.1\|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170 emb\|CAB36791.1\| putative protein [Arabidopsis thaliana] emb\|CAB80034.1\| putative protein [Arabid	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Sma3	Pentatricopeptide repeat protein	-	-	-

Source	Gene names
Sma3	At1g08070; At1g25360; At2g22070; At2g27610; At2g41080; At3g08820; At4g16835; At4g33170; At4g37380; At5g09950; B1032F05.19; B1080A02.28; DYW10; F10A12.28; F15K20.29; F17O14.29; F4F7.25; F4I10.100; F6G17.30; FCAALL.441; GSVIVT00000282001; GSVIVT00000887001;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33170.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:15995701-15998673 REVERSE LENGTH=990	57%
RefSeq	Arabidopsis thaliana	NP_195043.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002305120.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Separated hits, possible frame ERROR between 111 and 122, Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 169 - 246

Fln protein: AYP*IGAQDSAAYVLLSNIYSAAGQWDDRAKVRKLMxxxxxEKETGYTWIEVNGKVHTFVARDRSHSHTTEIYSMLEQLYGQMKAAGYVPDTNFVLHDVAEEQKEYFLFHHSEKLAIAFGIISTPPRTPIQIVKNLRVCGDCHNATKFISKILEREIVVRDANRFHHFR

Protein Length: 170

Fln nts: GCATATCCTTGAATTGGAGCCCAGGATTCTGCGGCATATGTGTTGCTATCGAACATCTACAGTGCGGCTGGCCAGTGGGATGATAGAGCAAAGGTGAGAAAACTTATGAAxxxxxxxxxxxxTGAAAAGGAGACAGGATATACGTGGATTGAAGTTAATGGTAAGGTACATACATTTGTTGCAAGAGACAGATCACACTCACATACAACGGAGATCTATTCAATGTTGGAGCAATTATATGGGCAAATGAAGGCGGCAGGGTATGTACCTGACACAAACTTCGTGCTCCATGACGTTGCAGAGGAGCAAAAGGAGTACTTTCTCTTTCACCACAGTGAGAAACTTGCCATTGCTTTTGGTATAATCAGCACACCCCCTAGAACACCTATCCAAATTGTCAAGAACCTCCGTGTTTGTGGAGACTGCCACAATGCCACTAAGTTCATCTCCAAGATACTTGAGAGGGAAATTGTAGTGAGGGATGCAAATCGCTTCCATCATTTCAGGG

Fln Alignment:

AllPine_a_rep_c80394___DSAAYVLLSNIYSAAGQWDDRAKVRKLMKxxxxEKETGYTWIEVNGKVHTFVARDRSHSHTTEIYSMLEQLYGQMKAAGYVPDTNFVLHDVAEEQKEYFLFHHSEKLAIAFGIISTPPRTPIQIVKNLRVCGDCHNATKFISKILEREIVVRDANRFHHFR
D5AAE0________________NAAKYVLLSNIYAAAGRWDDVAKVRKIMKxxxxQKQPGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain