SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129370

Length: 462 nt

UniGene Fasta

>sp_v3.0_unigene129370
AAGGGGTTATGTATGACGGCAAAATTGTAGCAGTTAAGGTTCTCAGTTTGGAAAATGAAGGGGCAAATAAGAGTTTTGAGAGAGAGTGCAATGTTTTGAGTAGAGTTAGACACAGGAATTTGATTAAAATTATAACCTGCTATTCAGACCTGGATTTCAGAGCTATAATATTTCCGTTCATGGAAAATGGAAGCTTAGAAAAGTGGTTATATCCCAATGGTGAAGAAGGTTCAAGTGCTTTGAGTTTGATTCAGAGGTTGAATATAGCAATAGACATTGCACATGGTTTGGCATATCTCCATCATCATTGTTTCATGCAAGTGATTCATTGTGATCTAAAACCCAACAATGTGCTTCTTGGGGATGATCTCACAGCATATATAATAGACTTTGGAATTGCTACCATATGTTTTGCAAATTCCAAGGAATCAGCGTCCATTTATACATATGCACTCAAAAGGA

Ace file of the UniGene sp_v3.0_unigene129370

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinase-like protein (Fragment) n=1 Tax=Prunus avium RepID=A8BLB8_PRUAV	-	-	5.99994e-41	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Sma3	Kinase-like protein	-	-	2.099e-41	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	7.159e-16	-

Source	Gene names
Sma3	AT3G47090; AT3G47570; AT3G47580; AT5G20480; At2g24130; At3g47090; At3g47570; At3g47580; B1047H05.12; B1047H05.26; B1047H05.29; B1047H05.53; B1307A11.10; F13I12.140; F1P2.120; F1P2.130; GSVIVT00004217001; GSVIVT00005204001; GSVIVT00014285001; GSVIVT0001717

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	proton-transporting V-type ATPase, V0 domain	GO:0033179	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	defense response signaling pathway, resistance gene-independent	GO:0010204	Biological Process	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-
Sma3	detection of bacterium	GO:0016045	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	-
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Copine	IPR010734	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C, eukaryotic	IPR011555	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47090.1	Leucine-rich repeat protein kinase family protein chr3:17341512-17344645 REVERSE LENGTH=1009	3.00018e-42	51%
RefSeq	Arabidopsis thaliana	NP_190293.1	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	3.99931e-42	51%
RefSeq	Populus trichocarpa	XP_002304735.1	predicted protein [Populus trichocarpa]	0.0	57%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLJ5

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 153 - 505

Fln protein: GVMYDGKIVAVKVLSLENEGANKSFERECNVLSRVRHRNLIKIITCYSDLDFRAIIFPFMENGSLEKWLYPNGEEGSSALSLIQRLNIAIDIAHGLAYLHHHCFMQVIHCDLKPNNVLLGDDLTAYIIDFGIATICFANSKESASIYTYALKR

Protein Length: 154

Fln nts: AAGGGGTTATGTATGACGGCAAAATTGTAGCAGTTAAGGTTCTCAGTTTGGAAAATGAAGGGGCAAATAAGAGTTTTGAGAGAGAGTGCAATGTTTTGAGTAGAGTTAGACACAGGAATTTGATTAAAATTATAACCTGCTATTCAGACCTGGATTTCAGAGCTATAATATTTCCGTTCATGGAAAATGGAAGCTTAGAAAAGTGGTTATATCCCAATGGTGAAGAAGGTTCAAGTGCTTTGAGTTTGATTCAGAGGTTGAATATAGCAATAGACATTGCACATGGTTTGGCATATCTCCATCATCATTGTTTCATGCAAGTGATTCATTGTGATCTAAAACCCAACAATGTGCTTCTTGGGGATGATCTCACAGCATATATAATAGACTTTGGAATTGCTACCATATGTTTTGCAAATTCCAAGGAATCAGCGTCCATTTATACATATGCACTCAAAAGGA

Fln Alignment:

AllPine_a_rep_c80215___GVMYDGKIVAVKVLSLENEGANKSFERECNVLSRVRHRNLIKIITCYSDLDFRAIIFPFMENGSLEKWLYPNGEEGSSALSLIQRLNIAIDIAHGLAYLHHHCFMQVIHCDLKPNNVLLGDDLTAYIIDFGIATICFANSKESAS
B8LLJ5________________GVLPDGREIAVKRLSIGSRQGDVEFFNEANLISRVQHRNLVKLLGCSVENSERLLVYEYLQNSSLDKIIFDITKR--HLLDWRERYEIIVGTARGLAYLHEESEIRIIHRDIKASNILLDNKYRPKIADFGLARL-FAEDKSHVS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
112	80		20		0.995493
166	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain