SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129361

Length: 381 nt

UniGene Fasta

>sp_v3.0_unigene129361
ATGGGAACTATGCTTACAGCGTAAGGAATACCATTCGAGATGATAAGATTGCGGCAAAGTTAGATCCATCTGATAAAAAGAAGATCGAGGAGGCCCTTGAACAGACTATCCAATGGCTGGATAACAACCAGCTTGCAGATGCTGACGAGTTTGATGACAAGATGAAGGAGCTGGAGAACACTTGCAATCCTATCATTGCTAAGATGTACCAAGGCGCTGGTGCTGATATACCTGGTGGAGCCTATGGAGCTGCTGGCTCTCCTGAACAGGGTTATTCTGCTGCTGCAGGCTCGGGGCCTAAAATTGAGGAAGTTGATTAAATAATTTTCTCTTTTTTCTTTTCTTTTTTAACCGTTGTTAGAAGATGATACAGCACCCTTA

Ace file of the UniGene sp_v3.0_unigene129361

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cell-autonomous heat shock cognate protein 70 [Cucurbita maxima]	-	-	6.0e-34	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Heat shock protein 70	-	-	2.508e-32	-

Source	Gene names
Sma3	ABE3; At1g16030; At1g56410; At3g09440; At3g12580; At5g02490; At5g02500; CHLREDRAFT_185673; F11F8; F13N6.9; F3L24.33; GSVIVT00017185001; GSVIVT00018481001; GSVIVT00021301001; GSVIVT00024351001; GSVIVT00024357001; HSC-2; HSC-I; HSC70; HSC70-1; HSC70-2; HSC7

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to virus	GO:0009615	Biological Process	-
Sma3	response to bacterium	GO:0009617	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G12580.1	HSP70, ATHSP70 heat shock protein 70 chr3:3991487-3993689 REVERSE LENGTH=650	1.0e-39	66%
RefSeq	Arabidopsis thaliana	NP_001119156.1	heat shock 70kDa protein 1/8 [Arabidopsis thaliana]	1.0e-39	64%
RefSeq	Populus trichocarpa	XP_002332049.1	predicted protein [Populus trichocarpa]	9.99967e-42	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg: your sequence is shorter than subject: 106 - 652

Fln protein: GNYAYSVRNTIRDDKIAAKLDPSDKKKIEEALEQTIQWLDNNQLADADEFDDKMKELENTCNPIIAKMYQGAGADIPGGAYGAAGSPEQGYSAAAGSGPKIEEVD*

Protein Length: 107

Fln nts: ATGGGAACTATGCTTACAGCGTAAGGAATACCATTCGAGATGATAAGATTGCGGCAAAGTTAGATCCATCTGATAAAAAGAAGATCGAGGAGGCCCTTGAACAGACTATCCAATGGCTGGATAACAACCAGCTTGCAGATGCTGACGAGTTTGATGACAAGATGAAGGAGCTGGAGAACACTTGCAATCCTATCATTGCTAAGATGTACCAAGGCGCTGGTGCTGATATACCTGGTGGAGCCTATGGAGCTGCTGGCTCTCCTGAACAGGGTTATTCTGCTGCTGCAGGCTCGGGGCCTAAAATTGAGGAAGTTGATTAA___ATAATTTTCTCTTTTTTCTTTTCTTTTTTAACCGTTGTTAGAAGATGATACAGCACCCTTA

Fln Alignment:

AllPine_a_rep_c80201___NYAYSVRNTIRDDKIAAKLDPSDKKKIEEALEQTIQWLDNNQLADADEFDDKMKELENTCNPIIAKMYQGAGADIPGGAYGAAGSPEQGYSAAAGSGPKIEEVD
B8LRY5________________NYAYNMRNTIRDDKIAGKLDPADKKKIEDAVDGIISWLDGNQLAEKEEFEDKLKELESTCNPIIAKMYQGEGGAGFPGADAFGGASGAGDESASGPGPKIEEVD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
131	80		20		0.995493
132			80	20	0.995493
134			20	80	0.995493
139	80	20			0.995493
140			80	20	0.995493
141	80			20	0.995493
142			20	80	0.995493
149	80		20		0.995505
151			80	20	0.995493
152	80	20			0.995493
153	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain