SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129049

Length: 285 nt

UniGene Fasta

>sp_v3.0_unigene129049
ATGGGAGAAGTTGAGGATCGGGGGGATCCTTTAGAAACTGCACAGGTTATAGAAGACACAGTCAAACGAGAGCTGGAAAGATGTCTTGAGGAAGCCGAGTACTATGACAACACCAGAACACAATTGGATTTGGCACTTGTGATTGATGGGAAGTGTTTAATGTATGCATTAGATCCTCAGTTACGAGGGAAACTGCTAAGGCTAAGCATGATGTCCAAAGCTGTTGTTTGTTGTCGAGTATCTCCTTTGCAGAAAGCACAGGTGACCAGCCTTATTAAGGATGGT

Ace file of the UniGene sp_v3.0_unigene129049

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aminophospholipid ATPase (Fragment) n=2 Tax=Malpighiales RepID=B9HU80_POPTR	-	-	4.0e-26	65%
FL-Next	sp=Phospholipid-transporting ATPase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Sma3	Aminophospholipid ATPase	-	-	3.268e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipid-translocating ATPase.	EC:3.6.3.1	-	7.871e-07	-

Source	Gene names
Sma3	ALA1; ALA3; At1g59820; CHLREDRAFT_172401; F23H11.14; GSVIVT00009008001; LOC_Os10g27220; Os10g0412000; OsI_33542; OsJ_31499; PHYPADRAFT_165384; POPTRDRAFT_230718; POPTRDRAFT_803861; RCOM_0699240;

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	phospholipid-translocating ATPase activity	GO:0004012	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	phospholipid transport	GO:0015914	Biological Process	-
Sma3	Golgi vesicle budding	GO:0048194	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G59820.1	ALA3 aminophospholipid ATPase 3 chr1:22011599-22020023 FORWARD LENGTH=1213	1.0e-29	62%
RefSeq	Arabidopsis thaliana	NP_176191.1	phospholipid-transporting ATPase 3 [Arabidopsis thaliana]	2.0e-29	62%
RefSeq	Populus trichocarpa	XP_002314626.1	aminophospholipid ATPase, partial [Populus trichocarpa]	4.0e-32	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9XIE6

Fln msg: Distance to subject end: 378 aas, your sequence is shorter than subject: 95 - 1213

Fln protein: MGEVEDRGDPLETAQVIEDTVKRELERCLEEAEYYDNTRTQLDLALVIDGKCLMYALDPQLRGKLLRLSMMSKAVVCCRVSPLQKAQVTSLIKDG

Protein Length: 96

Fln nts: ATGGGAGAAGTTGAGGATCGGGGGGATCCTTTAGAAACTGCACAGGTTATAGAAGACACAGTCAAACGAGAGCTGGAAAGATGTCTTGAGGAAGCCGAGTACTATGACAACACCAGAACACAATTGGATTTGGCACTTGTGATTGATGGGAAGTGTTTAATGTATGCATTAGATCCTCAGTTACGAGGGAAACTGCTAAGGCTAAGCATGATGTCCAAAGCTGTTGTTTGTTGTCGAGTATCTCCTTTGCAGAAAGCACAGGTGACCAGCCTTATTAAGGATGGT

Fln Alignment:

AllPine_a_rep_c79313___EVEDRGDPLETAQVIEDTVKRELERCLEEAEYYDNTRTQLDLALVIDGKCLMYALDPQLRGKLLRLSMMSKAVVCCRVSPLQKAQVTSLIKDG
Q9XIE6________________EAEERGDQVEIARVIKEEVKRELKKSLEEAQHSLHTVAGPKLSLVIDGKCLMYALDPSLRVMLLSLSLNCTSVVCCRVSPLQKAQVTSLVRKG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
60	25	75			0.996473
61	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain